Variant report

Variant	rs7603152
Chromosome Location	chr2:67855103-67855104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67624303..67625839-chr2:67853938..67856689,2	MCF-7	breast:
2	chr2:67852630..67855318-chr2:67906179..67908434,2	K562	blood:

Variant related genes	Relation type
ENSG00000143971	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10187948	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189868	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189870	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190391	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10197903	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10207162	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11883783	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11898758	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13387868	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13398669	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13398896	0.82[CEU][hapmap]
rs13422158	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58277478	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60347662	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6706989	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6749548	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6761524	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901828	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72901866	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7559840	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7567910	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7569221	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7569836	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7583557	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7594754	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7607277	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67853800-67855200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:67854600-67860000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:67854600-67860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:67855000-67855800	Enhancers	Fetal Stomach	stomach

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