Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10187948	0.86[EUR][1000 genomes]
rs10189868	0.86[EUR][1000 genomes]
rs10189870	0.86[EUR][1000 genomes]
rs10190391	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10197903	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10207162	0.90[EUR][1000 genomes]
rs11883783	0.86[EUR][1000 genomes]
rs11898758	0.84[EUR][1000 genomes]
rs13398669	0.92[EUR][1000 genomes]
rs13398896	0.82[CEU][hapmap]
rs13422158	0.92[EUR][1000 genomes]
rs58277478	0.90[EUR][1000 genomes]
rs60347662	0.92[EUR][1000 genomes]
rs6706989	0.90[EUR][1000 genomes]
rs6749548	0.92[EUR][1000 genomes]
rs6761524	0.84[EUR][1000 genomes]
rs72901828	0.98[EUR][1000 genomes]
rs72901866	0.92[EUR][1000 genomes]
rs7559840	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7567910	0.96[EUR][1000 genomes]
rs7569221	0.86[EUR][1000 genomes]
rs7569836	0.86[EUR][1000 genomes]
rs7583557	0.86[EUR][1000 genomes]
rs7594754	0.90[EUR][1000 genomes]
rs7603152	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7607277	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67793600-67799400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:67793800-67799600	Weak transcription	Psoas Muscle	Psoas
3	chr2:67793800-67800400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:67793800-67803000	Weak transcription	Fetal Stomach	stomach
5	chr2:67794600-67799400	Weak transcription	HSMMtube	muscle
6	chr2:67794800-67799400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:67795400-67799600	Weak transcription	NH-A	brain
8	chr2:67795600-67799800	Weak transcription	Osteobl	bone
9	chr2:67795600-67802800	Weak transcription	Fetal Lung	lung
10	chr2:67798000-67799800	Enhancers	Hela-S3	cervix
11	chr2:67798200-67799400	Weak transcription	NHDF-Ad	bronchial
12	chr2:67798200-67801800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:67798400-67799400	Enhancers	A549	lung
14	chr2:67798600-67800200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:67798600-67800600	Enhancers	Left Ventricle	heart
16	chr2:67798600-67800600	Enhancers	Pancreas	Pancrea
17	chr2:67798600-67801800	Enhancers	HMEC	breast
18	chr2:67798800-67799600	Weak transcription	NHLF	lung
19	chr2:67799000-67799400	Weak transcription	Stomach Mucosa	stomach
20	chr2:67799000-67801800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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