Variant report

Variant	rs7607277
Chromosome Location	chr2:67805115-67805116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10182267	0.83[AMR][1000 genomes]
rs10187948	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10189868	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10189870	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10190391	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10197903	0.98[EUR][1000 genomes]
rs10201993	0.83[AMR][1000 genomes]
rs10207162	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11883783	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11898758	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13387868	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13388861	0.83[AMR][1000 genomes]
rs13398669	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13398896	0.80[YRI][hapmap]
rs13422158	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58277478	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60347662	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6706989	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6749548	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6757264	0.82[AMR][1000 genomes]
rs6760771	0.82[AMR][1000 genomes]
rs6761524	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72901828	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901866	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7559840	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7567910	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7569221	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7569836	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7583557	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7594754	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7603152	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67801200-67806400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:67801800-67806000	Weak transcription	NHLF	lung
3	chr2:67803800-67806000	Weak transcription	Fetal Stomach	stomach
4	chr2:67804200-67805400	Weak transcription	Fetal Lung	lung

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