Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10187948	0.83[AMR][1000 genomes]
rs10189868	0.83[AMR][1000 genomes]
rs10189870	0.83[AMR][1000 genomes]
rs10190391	0.90[AMR][1000 genomes]
rs10201993	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11883783	0.83[AMR][1000 genomes]
rs11898758	0.80[AMR][1000 genomes]
rs13388861	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13390027	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13398669	0.80[AMR][1000 genomes]
rs13412509	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13415730	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13422158	0.80[AMR][1000 genomes]
rs28380601	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60347662	0.80[AMR][1000 genomes]
rs6706989	0.83[AMR][1000 genomes]
rs6749548	0.80[AMR][1000 genomes]
rs6761524	0.80[AMR][1000 genomes]
rs72901828	0.80[AMR][1000 genomes]
rs72901866	0.80[AMR][1000 genomes]
rs7559840	0.83[AMR][1000 genomes]
rs7567910	0.80[AMR][1000 genomes]
rs7569221	0.83[AMR][1000 genomes]
rs7569836	0.83[AMR][1000 genomes]
rs7583557	0.83[AMR][1000 genomes]
rs7594754	0.80[AMR][1000 genomes]
rs7607277	0.83[AMR][1000 genomes]
rs9309399	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67776200-67787200	Weak transcription	Pancreas	Pancrea
2	chr2:67776200-67787600	Weak transcription	Left Ventricle	heart
3	chr2:67776400-67788600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:67780000-67783000	Enhancers	Fetal Heart	heart

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