Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10184721	0.86[ASN][1000 genomes]
rs11900117	0.86[ASN][1000 genomes]
rs11904407	1.00[ASN][1000 genomes]
rs13398896	0.86[ASN][1000 genomes]
rs1367476	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17034036	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861704	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2902024	0.86[ASN][1000 genomes]
rs6546321	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757264	0.86[ASN][1000 genomes]
rs6760771	0.86[ASN][1000 genomes]
rs72899995	0.86[ASN][1000 genomes]
rs7568300	1.00[ASN][1000 genomes]
rs7570412	1.00[ASN][1000 genomes]
rs7573396	0.86[ASN][1000 genomes]
rs7579880	1.00[ASN][1000 genomes]
rs7582772	0.86[ASN][1000 genomes]
rs7589963	0.86[ASN][1000 genomes]
rs7604451	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67813400-67826400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:67813600-67828800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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