Variant report

Variant	rs7604451
Chromosome Location	chr2:67859388-67859389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10184721	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10187948	0.83[AMR][1000 genomes]
rs10189868	0.83[AMR][1000 genomes]
rs10189870	0.83[AMR][1000 genomes]
rs10204519	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11883783	0.83[AMR][1000 genomes]
rs11900117	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11904407	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904581	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13398896	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17034036	1.00[ASN][1000 genomes]
rs2902024	0.86[ASN][1000 genomes]
rs6546321	1.00[ASN][1000 genomes]
rs6708296	1.00[ASN][1000 genomes]
rs6726761	1.00[ASN][1000 genomes]
rs6757264	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6760771	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72899995	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7559840	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs7568300	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569221	0.83[AMR][1000 genomes]
rs7569836	0.83[AMR][1000 genomes]
rs7570412	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573396	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7579880	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582772	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7583557	0.83[AMR][1000 genomes]
rs7589963	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7603152	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67854600-67860000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67854600-67860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67857800-67859400	Enhancers	Primary hematopoietic stem cells	blood
4	chr2:67858800-67859400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:67859200-67860600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:67859200-67860600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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