Variant report

Variant	rs72899995
Chromosome Location	chr2:67789793-67789794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10184721	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10190391	0.85[AMR][1000 genomes]
rs10204519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11900117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904407	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11904581	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13398896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034036	0.86[ASN][1000 genomes]
rs6546321	0.86[ASN][1000 genomes]
rs6708296	0.86[ASN][1000 genomes]
rs6726761	0.86[ASN][1000 genomes]
rs6757264	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760771	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568300	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7570412	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7573396	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579880	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7582772	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7589963	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604451	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67786400-67793600	Enhancers	Hela-S3	cervix
2	chr2:67786600-67790800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:67787400-67790200	Enhancers	Stomach Mucosa	stomach
4	chr2:67788000-67789800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:67788800-67789800	Enhancers	HUVEC	blood vessel
6	chr2:67788800-67790000	Weak transcription	Pancreas	Pancrea
7	chr2:67788800-67791600	Weak transcription	Left Ventricle	heart
8	chr2:67788800-67792800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:67789000-67790800	Weak transcription	NHLF	lung
10	chr2:67789000-67791400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:67789200-67791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:67789200-67791400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:67789200-67791400	Enhancers	Fetal Heart	heart
14	chr2:67789200-67791400	Weak transcription	NH-A	brain
15	chr2:67789200-67791600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:67789200-67791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:67789200-67791600	Weak transcription	HSMMtube	muscle
18	chr2:67789200-67792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:67789200-67793000	Weak transcription	Fetal Stomach	stomach
20	chr2:67789400-67789800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:67789400-67790400	Weak transcription	HSMM	muscle
22	chr2:67789400-67790600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:67789400-67790800	Weak transcription	Osteobl	bone
24	chr2:67789400-67795000	Weak transcription	Fetal Lung	lung
25	chr2:67789600-67790600	Enhancers	A549	lung

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