Variant report

Variant	rs6549006
Chromosome Location	chr3:68169256-68169257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11127865	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11920675	0.81[CHB][hapmap]
rs11920869	0.84[ASW][hapmap]
rs11921557	0.89[EUR][1000 genomes]
rs12714615	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13078759	1.00[CEU][hapmap]
rs1447756	0.81[CHB][hapmap]
rs1595489	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs4302389	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4419383	1.00[CEU][hapmap]
rs4508789	1.00[CEU][hapmap]
rs4602395	1.00[CEU][hapmap]
rs56831191	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57701717	0.83[EUR][1000 genomes]
rs6419757	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6419758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6548943	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs6548958	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6548960	0.89[ASN][1000 genomes]
rs6548964	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6548970	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs6548977	1.00[CEU][hapmap]
rs6548978	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs6548979	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs6548982	0.95[ASN][1000 genomes]
rs6548983	0.92[ASN][1000 genomes]
rs6548989	0.95[ASN][1000 genomes]
rs6548992	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs6548993	0.95[ASN][1000 genomes]
rs6548998	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6549003	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs6549018	0.89[EUR][1000 genomes]
rs6771439	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6777162	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs6781199	1.00[CEU][hapmap]
rs6785163	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6792628	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs6795487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6809593	1.00[CEU][hapmap]
rs7373559	0.95[ASN][1000 genomes]
rs7621261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7624596	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7626911	0.89[EUR][1000 genomes]
rs7630992	1.00[CEU][hapmap]
rs7634100	1.00[CEU][hapmap]
rs7646295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9309966	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs961915	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9821459	1.00[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9850969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9990002	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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