Variant report
Variant | rs6550562 |
---|---|
Chromosome Location | chr3:21055936-21055937 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1391138 | 0.80[EUR][1000 genomes] |
rs1497516 | 0.89[EUR][1000 genomes] |
rs4306882 | 0.85[EUR][1000 genomes] |
rs4431129 | 0.92[EUR][1000 genomes] |
rs4858288 | 0.81[EUR][1000 genomes] |
rs6550561 | 0.82[EUR][1000 genomes] |
rs7625772 | 0.83[EUR][1000 genomes] |
rs7633632 | 0.85[EUR][1000 genomes] |
rs7652147 | 0.81[EUR][1000 genomes] |
rs869494 | 0.84[EUR][1000 genomes] |
rs869495 | 0.84[EUR][1000 genomes] |
rs973870 | 0.86[EUR][1000 genomes] |
rs9811079 | 0.83[EUR][1000 genomes] |
rs9881998 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834629 | chr3:20878902-21057592 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv876607 | chr3:20972475-21087219 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
3 | nsv876608 | chr3:21008710-21203048 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1014809 | chr3:21024655-21060336 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
5 | nsv998068 | chr3:21050191-21212603 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:21055200-21059000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |