Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1037635	1.00[JPT][hapmap]
rs11129128	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs11915299	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13317815	0.86[TSI][hapmap]
rs1533141	0.81[AMR][1000 genomes]
rs35755171	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35755253	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3762775	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs3935253	1.00[JPT][hapmap];0.86[TSI][hapmap]
rs4490300	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs4602333	1.00[JPT][hapmap]
rs4858099	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4858554	1.00[JPT][hapmap]
rs4858564	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs6550808	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs6550830	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6776201	1.00[JPT][hapmap]
rs6776568	1.00[JPT][hapmap]
rs6778577	0.86[TSI][hapmap]
rs6791805	1.00[JPT][hapmap]
rs6806085	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71324126	0.81[AMR][1000 genomes]
rs7426647	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7434131	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610935	1.00[JPT][hapmap]
rs7611018	1.00[JPT][hapmap]
rs9809225	1.00[JPT][hapmap]
rs9812419	1.00[JPT][hapmap]
rs9855481	1.00[JPT][hapmap];0.86[TSI][hapmap]
rs9859567	1.00[JPT][hapmap]
rs9875577	1.00[JPT][hapmap]
rs9882067	1.00[JPT][hapmap]
rs9883834	0.82[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6550831	SCGB1D4	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
2	chr3:24045600-24047600	Enhancers	NHEK	skin
3	chr3:24046400-24051800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:24046400-24060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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