Variant report

Variant	rs35755171
Chromosome Location	chr3:24041560-24041561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24040514..24042226-chr3:24050614..24053145,2	K562	blood:
2	chr3:23961544..23965594-chr3:24039129..24042717,4	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10084748	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037635	1.00[ASN][1000 genomes]
rs11129128	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915299	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13070128	1.00[ASN][1000 genomes]
rs13087250	1.00[ASN][1000 genomes]
rs13316457	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317815	0.84[EUR][1000 genomes]
rs13321439	0.84[EUR][1000 genomes]
rs13321440	0.84[EUR][1000 genomes]
rs1533141	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1567579	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567580	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28524116	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34036067	1.00[ASN][1000 genomes]
rs34058540	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34082882	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34593533	0.84[EUR][1000 genomes]
rs34866549	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953164	1.00[ASN][1000 genomes]
rs35136361	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35457462	0.81[EUR][1000 genomes]
rs35755253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36063721	1.00[ASN][1000 genomes]
rs36089963	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762775	1.00[ASN][1000 genomes]
rs3935253	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131404	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4300960	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4490300	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535169	1.00[ASN][1000 genomes]
rs4602333	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858096	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858099	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4858554	1.00[ASN][1000 genomes]
rs4858556	1.00[ASN][1000 genomes]
rs4858564	1.00[ASN][1000 genomes]
rs55932805	1.00[ASN][1000 genomes]
rs6550808	1.00[ASN][1000 genomes]
rs6550831	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66609380	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67002637	1.00[ASN][1000 genomes]
rs67236598	1.00[ASN][1000 genomes]
rs67606949	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767005	1.00[ASN][1000 genomes]
rs6770052	0.84[EUR][1000 genomes]
rs6775878	1.00[ASN][1000 genomes]
rs6776201	1.00[ASN][1000 genomes]
rs6776568	1.00[ASN][1000 genomes]
rs6778577	0.82[EUR][1000 genomes]
rs6790140	1.00[ASN][1000 genomes]
rs6791805	1.00[ASN][1000 genomes]
rs6803214	1.00[ASN][1000 genomes]
rs6803587	0.84[EUR][1000 genomes]
rs71324126	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150266	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150299	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426647	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7434131	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7610689	1.00[ASN][1000 genomes]
rs7610935	1.00[ASN][1000 genomes]
rs7611018	1.00[ASN][1000 genomes]
rs954748	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809225	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812419	1.00[ASN][1000 genomes]
rs9817923	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9853954	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855481	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859567	1.00[ASN][1000 genomes]
rs9863176	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875577	1.00[ASN][1000 genomes]
rs9882067	1.00[ASN][1000 genomes]
rs9883834	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
2	chr3:24036400-24043600	Weak transcription	Aorta	Aorta
3	chr3:24040600-24041600	Enhancers	Brain Angular Gyrus	brain
4	chr3:24040600-24041600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:24040800-24041800	Enhancers	Fetal Lung	lung
6	chr3:24041000-24045600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:24041000-24045600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links