Variant report

Variant	rs35457462
Chromosome Location	chr3:23976477-23976478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23973653..23976851-chr3:23984603..23988994,4	MCF-7	breast:
2	chr3:23976437..23979344-chr3:23981165..23983403,2	MCF-7	breast:
3	chr3:23972068..23974390-chr3:23974759..23977973,3	MCF-7	breast:
4	chr3:23956631..23966740-chr3:23975650..23993173,64	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197885	Chromatin interaction
ENSG00000174738	Chromatin interaction
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 176 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10084748	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10865791	0.83[AFR][1000 genomes]
rs10865792	0.84[AFR][1000 genomes]
rs11129128	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11129129	0.84[AFR][1000 genomes]
rs11926688	0.84[AFR][1000 genomes]
rs13087250	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13316457	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13317815	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13321439	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13321440	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1533141	0.84[EUR][1000 genomes]
rs1567579	0.89[EUR][1000 genomes]
rs1567580	0.89[EUR][1000 genomes]
rs2003217	0.84[AFR][1000 genomes]
rs2360020	0.90[ASN][1000 genomes]
rs28524116	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34036067	0.91[EUR][1000 genomes]
rs34058540	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34082882	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34593533	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34866549	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35136361	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35755171	0.81[EUR][1000 genomes]
rs35755253	0.81[EUR][1000 genomes]
rs36063721	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36089963	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3762775	0.91[EUR][1000 genomes]
rs3935253	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4078154	0.84[AFR][1000 genomes]
rs4078155	0.84[AFR][1000 genomes]
rs4131404	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4132595	0.97[ASN][1000 genomes]
rs4241516	0.84[AFR][1000 genomes]
rs4241519	0.82[AFR][1000 genomes]
rs4292186	0.84[AFR][1000 genomes]
rs4292187	0.84[AFR][1000 genomes]
rs4293661	0.84[AFR][1000 genomes]
rs4300960	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4355230	0.81[AFR][1000 genomes]
rs4459841	0.84[AFR][1000 genomes]
rs4490300	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4564908	0.84[AFR][1000 genomes]
rs4578971	0.84[AFR][1000 genomes]
rs4602333	0.85[EUR][1000 genomes]
rs4858096	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4858560	0.84[AFR][1000 genomes]
rs4858561	0.84[AFR][1000 genomes]
rs4858563	0.81[AFR][1000 genomes]
rs4858564	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59090179	0.81[ASN][1000 genomes]
rs6550808	0.91[EUR][1000 genomes]
rs6550813	0.81[AFR][1000 genomes]
rs6550816	0.82[AFR][1000 genomes]
rs66609380	0.94[EUR][1000 genomes]
rs67002637	0.89[EUR][1000 genomes]
rs67465878	0.81[ASN][1000 genomes]
rs67606949	0.92[EUR][1000 genomes]
rs6763241	0.83[AFR][1000 genomes]
rs6770052	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778577	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6788335	0.81[AFR][1000 genomes]
rs6789474	0.86[AFR][1000 genomes]
rs6790140	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6803400	0.81[AFR][1000 genomes]
rs6803587	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805489	0.82[AFR][1000 genomes]
rs71324126	0.84[EUR][1000 genomes]
rs72627028	0.84[ASN][1000 genomes]
rs72627029	0.84[ASN][1000 genomes]
rs72627030	0.84[ASN][1000 genomes]
rs72627031	0.84[ASN][1000 genomes]
rs72627032	0.84[ASN][1000 genomes]
rs72627033	0.84[ASN][1000 genomes]
rs72627034	0.84[ASN][1000 genomes]
rs72627035	0.84[ASN][1000 genomes]
rs72627036	0.84[ASN][1000 genomes]
rs72627037	0.84[ASN][1000 genomes]
rs72627038	0.84[ASN][1000 genomes]
rs72627039	0.84[ASN][1000 genomes]
rs72627040	0.84[ASN][1000 genomes]
rs72627042	0.81[ASN][1000 genomes]
rs72627043	0.84[ASN][1000 genomes]
rs72627044	0.90[ASN][1000 genomes]
rs72627046	0.90[ASN][1000 genomes]
rs72627047	0.87[ASN][1000 genomes]
rs72627048	0.87[ASN][1000 genomes]
rs72627049	0.87[ASN][1000 genomes]
rs72627050	0.87[ASN][1000 genomes]
rs72627051	0.90[ASN][1000 genomes]
rs72627052	0.90[ASN][1000 genomes]
rs72627053	0.90[ASN][1000 genomes]
rs72627055	0.90[ASN][1000 genomes]
rs72627056	0.90[ASN][1000 genomes]
rs72627057	0.90[ASN][1000 genomes]
rs72627058	0.90[ASN][1000 genomes]
rs72627059	0.90[ASN][1000 genomes]
rs72627060	0.90[ASN][1000 genomes]
rs72627061	0.90[ASN][1000 genomes]
rs72627062	0.90[ASN][1000 genomes]
rs72627063	0.90[ASN][1000 genomes]
rs72627064	0.90[ASN][1000 genomes]
rs72627065	0.90[ASN][1000 genomes]
rs72627067	0.90[ASN][1000 genomes]
rs72627068	0.90[ASN][1000 genomes]
rs72627069	0.90[ASN][1000 genomes]
rs72627070	0.90[ASN][1000 genomes]
rs72627071	0.90[ASN][1000 genomes]
rs72627072	0.90[ASN][1000 genomes]
rs72627073	0.90[ASN][1000 genomes]
rs72627074	0.90[ASN][1000 genomes]
rs72627075	0.90[ASN][1000 genomes]
rs72627076	0.90[ASN][1000 genomes]
rs72627078	0.84[ASN][1000 genomes]
rs72627079	0.90[ASN][1000 genomes]
rs72627080	0.90[ASN][1000 genomes]
rs72627081	0.90[ASN][1000 genomes]
rs72627082	0.90[ASN][1000 genomes]
rs72627083	0.90[ASN][1000 genomes]
rs72627084	0.90[ASN][1000 genomes]
rs72627085	0.90[ASN][1000 genomes]
rs72627086	0.90[ASN][1000 genomes]
rs72627087	0.90[ASN][1000 genomes]
rs72627088	0.90[ASN][1000 genomes]
rs72627089	0.90[ASN][1000 genomes]
rs72627090	0.90[ASN][1000 genomes]
rs72627091	0.93[ASN][1000 genomes]
rs72627094	0.88[AMR][1000 genomes]
rs72627096	0.93[ASN][1000 genomes]
rs72627097	0.93[ASN][1000 genomes]
rs72627098	0.93[ASN][1000 genomes]
rs72627099	0.93[ASN][1000 genomes]
rs72627100	0.87[ASN][1000 genomes]
rs72627101	0.87[ASN][1000 genomes]
rs72627102	0.87[ASN][1000 genomes]
rs72628103	0.87[ASN][1000 genomes]
rs72628104	0.87[ASN][1000 genomes]
rs72628105	0.87[ASN][1000 genomes]
rs72628106	0.87[ASN][1000 genomes]
rs72628107	0.87[ASN][1000 genomes]
rs72628108	0.87[ASN][1000 genomes]
rs72628109	0.87[ASN][1000 genomes]
rs72628111	0.87[ASN][1000 genomes]
rs72628112	0.84[ASN][1000 genomes]
rs72628113	0.84[ASN][1000 genomes]
rs72628114	0.84[ASN][1000 genomes]
rs72628115	0.84[ASN][1000 genomes]
rs72628116	0.84[ASN][1000 genomes]
rs72628119	0.81[ASN][1000 genomes]
rs72628123	0.81[ASN][1000 genomes]
rs72628124	0.81[ASN][1000 genomes]
rs72628126	0.84[ASN][1000 genomes]
rs73150266	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73150299	0.86[EUR][1000 genomes]
rs7610533	0.84[AFR][1000 genomes]
rs7610625	0.83[AFR][1000 genomes]
rs7616154	0.82[AFR][1000 genomes]
rs7626246	0.81[AFR][1000 genomes]
rs7631236	0.84[AFR][1000 genomes]
rs7631238	0.84[AFR][1000 genomes]
rs7643700	0.81[AFR][1000 genomes]
rs7646930	0.84[AFR][1000 genomes]
rs7650339	0.82[AFR][1000 genomes]
rs954748	0.90[EUR][1000 genomes]
rs9809225	0.92[EUR][1000 genomes]
rs9812870	0.91[EUR][1000 genomes]
rs9817923	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9831760	0.84[AFR][1000 genomes]
rs9853954	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9855481	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9863176	0.92[EUR][1000 genomes]
rs9869684	0.84[AFR][1000 genomes]
rs9875577	0.86[EUR][1000 genomes]
rs9883834	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23961800-23980200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:23962000-23977800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:23962000-23985600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:23963800-23978400	Weak transcription	Aorta	Aorta
5	chr3:23964200-23985000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:23970400-23978600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:23973200-23982400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:23973400-23979600	Weak transcription	K562	blood
9	chr3:23973600-23978600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:23975000-23979600	Weak transcription	Fetal Heart	heart
11	chr3:23975200-23976800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:23975600-23976600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:23975800-23976600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:23976000-23976600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:23976400-23978600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links