The 2.0 version of rSNPBase

Variant report

Variant rs72628109
Chromosome Location chr3:24015277-24015278
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23989200-24018000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:23989200-24020600 Weak transcription H9 Cell Line embryonic stem cell
3 chr3:23989200-24033200 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr3:23989800-24017800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr3:23992400-24017400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:23993600-24017800 Weak transcription Brain Germinal Matrix brain
7 chr3:23994000-24022800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr3:23996200-24021200 Weak transcription Small Intestine intestine
9 chr3:23999800-24019600 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr3:24000000-24020400 Strong transcription Primary T regulatory cells fromperipheralblood blood
11 chr3:24000800-24019600 Strong transcription Primary T cells fromperipheralblood blood
12 chr3:24000800-24021800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr3:24002600-24017600 Weak transcription Stomach Mucosa stomach
14 chr3:24002600-24020200 Strong transcription Primary B cells from peripheral blood blood
15 chr3:24004000-24016400 Weak transcription Lung lung
16 chr3:24004000-24017800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr3:24004000-24017800 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr3:24004000-24017800 Weak transcription Spleen Spleen
19 chr3:24004000-24018000 Weak transcription Esophagus oesophagus
20 chr3:24004000-24022600 Weak transcription Aorta Aorta
21 chr3:24004000-24022600 Weak transcription Pancreas Pancrea
22 chr3:24004000-24023400 Weak transcription Gastric stomach
23 chr3:24004000-24023800 Weak transcription Placenta Amnion Placenta Amnion
24 chr3:24004200-24022600 Weak transcription Right Ventricle heart
25 chr3:24005200-24022600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr3:24005400-24017800 Weak transcription HSMMtube muscle
27 chr3:24005600-24017800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr3:24005600-24032800 Weak transcription NH-A brain
29 chr3:24005800-24021400 Strong transcription Placenta Placenta
30 chr3:24006200-24019400 Strong transcription Primary T cells from cord blood blood
31 chr3:24007800-24017600 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr3:24007800-24018000 Weak transcription Thymus Thymus
33 chr3:24007800-24023200 Weak transcription Colonic Mucosa Colon
34 chr3:24008000-24017600 Weak transcription HSMM muscle
35 chr3:24008000-24017800 Weak transcription Fetal Muscle Trunk muscle
36 chr3:24008400-24017800 Weak transcription Fetal Muscle Leg muscle
37 chr3:24008600-24017600 Weak transcription Fetal Brain Male brain
38 chr3:24009000-24015400 Strong transcription Rectal Mucosa Donor 29 rectum
39 chr3:24009200-24017800 Weak transcription Fetal Intestine Small intestine
40 chr3:24009800-24022600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr3:24010000-24017400 Weak transcription H1 Cell Line embryonic stem cell
42 chr3:24010000-24017600 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr3:24010200-24017400 Weak transcription Brain Substantia Nigra brain
44 chr3:24010200-24017600 Weak transcription Brain Cingulate Gyrus brain
45 chr3:24010200-24017600 Weak transcription Fetal Kidney kidney
46 chr3:24010200-24017600 Weak transcription GM12878-XiMat blood
47 chr3:24010200-24017600 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr3:24010200-24017800 Weak transcription Left Ventricle heart
49 chr3:24010200-24017800 Weak transcription HMEC breast
50 chr3:24010200-24018000 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015