The 2.0 version of rSNPBase

Variant report

Variant rs72628106
Chromosome Location chr3:24009105-24009106
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23989200-24018000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:23989200-24020600 Weak transcription H9 Cell Line embryonic stem cell
3 chr3:23989200-24033200 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr3:23989800-24017800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr3:23992400-24017400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:23993600-24009400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr3:23993600-24017800 Weak transcription Brain Germinal Matrix brain
8 chr3:23994000-24022800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr3:23996000-24012600 Strong transcription Fetal Adrenal Gland Adrenal Gland
10 chr3:23996200-24009400 Weak transcription Psoas Muscle Psoas
11 chr3:23996200-24011200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr3:23996200-24021200 Weak transcription Small Intestine intestine
13 chr3:23997200-24012200 Strong transcription Liver Liver
14 chr3:23999200-24011600 Strong transcription HUES6 Cell Line embryonic stem cell
15 chr3:23999800-24019600 Strong transcription Primary T helper cells fromperipheralblood blood
16 chr3:24000000-24020400 Strong transcription Primary T regulatory cells fromperipheralblood blood
17 chr3:24000600-24012200 Strong transcription Primary T helper cells PMA-I stimulated --
18 chr3:24000800-24010400 Strong transcription iPS-20b Cell Line embryonic stem cell
19 chr3:24000800-24019600 Strong transcription Primary T cells fromperipheralblood blood
20 chr3:24000800-24021800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
21 chr3:24001000-24011000 Strong transcription HUES48 Cell Line embryonic stem cell
22 chr3:24001400-24010200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr3:24001400-24012600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr3:24001600-24012000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
25 chr3:24002400-24010200 Strong transcription Monocytes-CD14+_RO01746 blood
26 chr3:24002600-24017600 Weak transcription Stomach Mucosa stomach
27 chr3:24002600-24020200 Strong transcription Primary B cells from peripheral blood blood
28 chr3:24002800-24009200 Strong transcription Fetal Intestine Small intestine
29 chr3:24003000-24012600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr3:24003200-24010400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr3:24003200-24011600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr3:24003600-24010400 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr3:24004000-24013200 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr3:24004000-24016400 Weak transcription Lung lung
35 chr3:24004000-24017800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr3:24004000-24017800 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr3:24004000-24017800 Weak transcription Spleen Spleen
38 chr3:24004000-24018000 Weak transcription Esophagus oesophagus
39 chr3:24004000-24022600 Weak transcription Aorta Aorta
40 chr3:24004000-24022600 Weak transcription Pancreas Pancrea
41 chr3:24004000-24023400 Weak transcription Gastric stomach
42 chr3:24004000-24023800 Weak transcription Placenta Amnion Placenta Amnion
43 chr3:24004200-24011200 Weak transcription HepG2 liver
44 chr3:24004200-24022600 Weak transcription Right Ventricle heart
45 chr3:24004400-24009400 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr3:24004800-24011200 Weak transcription ES-WA7 Cell Line embryonic stem cell
47 chr3:24005000-24009400 Weak transcription GM12878-XiMat blood
48 chr3:24005200-24022600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr3:24005400-24017800 Weak transcription HSMMtube muscle
50 chr3:24005600-24009200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015