Variant report

Variant	rs72628130
Chromosome Location	chr3:24091571-24091572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs4858102	0.86[ASN][1000 genomes]
rs59090179	0.83[ASN][1000 genomes]
rs67465878	0.83[ASN][1000 genomes]
rs72617499	0.82[ASN][1000 genomes]
rs72617500	0.86[ASN][1000 genomes]
rs72617501	0.86[ASN][1000 genomes]
rs72617502	0.86[ASN][1000 genomes]
rs72619904	0.86[ASN][1000 genomes]
rs72619905	0.86[ASN][1000 genomes]
rs72619906	0.86[ASN][1000 genomes]
rs72619907	0.86[ASN][1000 genomes]
rs72619908	0.86[ASN][1000 genomes]
rs72619909	0.86[ASN][1000 genomes]
rs72619910	0.86[ASN][1000 genomes]
rs72619911	0.80[ASN][1000 genomes]
rs72627100	0.83[ASN][1000 genomes]
rs72627101	0.83[ASN][1000 genomes]
rs72627102	0.83[ASN][1000 genomes]
rs72628103	0.83[ASN][1000 genomes]
rs72628104	0.83[ASN][1000 genomes]
rs72628105	0.83[ASN][1000 genomes]
rs72628106	0.83[ASN][1000 genomes]
rs72628107	0.83[ASN][1000 genomes]
rs72628108	0.83[ASN][1000 genomes]
rs72628109	0.83[ASN][1000 genomes]
rs72628111	0.83[ASN][1000 genomes]
rs72628119	0.83[ASN][1000 genomes]
rs72628123	0.83[ASN][1000 genomes]
rs72628124	0.83[ASN][1000 genomes]
rs72628126	0.87[ASN][1000 genomes]
rs72628127	0.90[ASN][1000 genomes]
rs72628129	1.00[ASN][1000 genomes]
rs72628132	1.00[ASN][1000 genomes]
rs72628133	0.93[ASN][1000 genomes]
rs72628135	0.93[ASN][1000 genomes]
rs72628136	0.93[ASN][1000 genomes]
rs72628137	0.93[ASN][1000 genomes]
rs72628138	0.93[ASN][1000 genomes]
rs72628140	0.93[ASN][1000 genomes]
rs72628141	0.93[ASN][1000 genomes]
rs72628142	0.93[ASN][1000 genomes]
rs72628143	0.93[ASN][1000 genomes]
rs72628144	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2527637	chr3:24090223-24091668	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
2	chr3:24089800-24091600	Weak transcription	Psoas Muscle	Psoas
3	chr3:24089800-24092800	Weak transcription	A549	lung
4	chr3:24090800-24093600	Weak transcription	Ovary	ovary
5	chr3:24090800-24101400	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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