The 2.0 version of rSNPBase

Variant report

Variant rs72619909
Chromosome Location chr3:24165472-24165473
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24155800-24169600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:24156400-24187800 Weak transcription Brain Inferior Temporal Lobe brain
3 chr3:24157400-24173000 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr3:24158800-24169800 Strong transcription Breast Myoepithelial Primary Cells Breast
5 chr3:24158800-24170200 Strong transcription Liver Liver
6 chr3:24159600-24167600 Weak transcription Fetal Stomach stomach
7 chr3:24159800-24168200 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr3:24159800-24169600 Weak transcription Colon Smooth Muscle Colon
9 chr3:24160000-24168200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr3:24160400-24173000 Weak transcription Primary hematopoietic stem cells blood
11 chr3:24161000-24170200 Strong transcription Fetal Intestine Small intestine
12 chr3:24161200-24167200 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr3:24161200-24173000 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr3:24161200-24176400 Weak transcription Pancreas Pancrea
15 chr3:24161400-24169000 Weak transcription Esophagus oesophagus
16 chr3:24161400-24169600 Weak transcription Gastric stomach
17 chr3:24161400-24169600 Weak transcription Lung lung
18 chr3:24161400-24170600 Weak transcription Psoas Muscle Psoas
19 chr3:24161800-24173000 Weak transcription Placenta Amnion Placenta Amnion
20 chr3:24162000-24168200 Weak transcription Brain Angular Gyrus brain
21 chr3:24162400-24170000 Weak transcription Rectal Smooth Muscle rectum
22 chr3:24162600-24168200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr3:24162800-24178200 Weak transcription Spleen Spleen
24 chr3:24163000-24165800 Strong transcription Fetal Intestine Large intestine
25 chr3:24163000-24168400 Weak transcription HepG2 liver
26 chr3:24163200-24165600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr3:24164200-24165800 Enhancers HSMMtube muscle
28 chr3:24164400-24165800 Enhancers NHLF lung
29 chr3:24164400-24166400 Enhancers NHDF-Ad bronchial
30 chr3:24164400-24169600 Weak transcription Left Ventricle heart
31 chr3:24164600-24165600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
32 chr3:24164600-24165600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr3:24164600-24165800 Enhancers Muscle Satellite Cultured Cells --
34 chr3:24164600-24165800 Enhancers HSMM muscle
35 chr3:24164600-24166400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr3:24164600-24167200 Weak transcription Stomach Smooth Muscle stomach
37 chr3:24164800-24165600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr3:24164800-24165600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr3:24165000-24165600 Enhancers Aorta Aorta
40 chr3:24165000-24165600 Enhancers NH-A brain
41 chr3:24165000-24165600 Enhancers Osteobl bone
42 chr3:24165000-24166000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr3:24165000-24168200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr3:24165000-24173400 Weak transcription Right Ventricle heart
45 chr3:24165200-24165600 Enhancers ES-I3 Cell Line embryonic stem cell
46 chr3:24165200-24165600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
47 chr3:24165200-24166400 Enhancers Adipose Nuclei Adipose
48 chr3:24165200-24168200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr3:24165200-24168200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr3:24165200-24169600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015