Variant report

Variant	rs72617499
Chromosome Location	chr3:24129539-24129540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs4858102	0.96[ASN][1000 genomes]
rs58349927	0.84[ASN][1000 genomes]
rs72617500	0.96[ASN][1000 genomes]
rs72617501	0.96[ASN][1000 genomes]
rs72617502	0.96[ASN][1000 genomes]
rs72619904	0.96[ASN][1000 genomes]
rs72619905	0.96[ASN][1000 genomes]
rs72619906	0.96[ASN][1000 genomes]
rs72619907	0.96[ASN][1000 genomes]
rs72619908	0.96[ASN][1000 genomes]
rs72619909	0.89[ASN][1000 genomes]
rs72619910	0.89[ASN][1000 genomes]
rs72619911	0.90[ASN][1000 genomes]
rs72619912	0.84[ASN][1000 genomes]
rs72619913	0.84[ASN][1000 genomes]
rs72619914	0.84[ASN][1000 genomes]
rs72619915	0.84[ASN][1000 genomes]
rs72619916	0.87[ASN][1000 genomes]
rs72619919	0.84[ASN][1000 genomes]
rs72619920	0.84[ASN][1000 genomes]
rs72628129	0.82[ASN][1000 genomes]
rs72628130	0.82[ASN][1000 genomes]
rs72628132	0.82[ASN][1000 genomes]
rs72628133	0.89[ASN][1000 genomes]
rs72628135	0.89[ASN][1000 genomes]
rs72628136	0.89[ASN][1000 genomes]
rs72628137	0.89[ASN][1000 genomes]
rs72628138	0.89[ASN][1000 genomes]
rs72628140	0.89[ASN][1000 genomes]
rs72628141	0.89[ASN][1000 genomes]
rs72628142	0.89[ASN][1000 genomes]
rs72628143	0.89[ASN][1000 genomes]
rs72628144	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24128800-24130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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