The 2.0 version of rSNPBase

Variant report

Variant rs58349927
Chromosome Location chr3:24183586-24183587
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24156400-24187800 Weak transcription Brain Inferior Temporal Lobe brain
2 chr3:24167000-24197800 Weak transcription K562 blood
3 chr3:24167800-24187800 Weak transcription Small Intestine intestine
4 chr3:24169000-24187800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr3:24169800-24186200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr3:24170800-24184600 Weak transcription Brain Anterior Caudate brain
7 chr3:24171400-24186200 Strong transcription Fetal Intestine Large intestine
8 chr3:24173000-24187400 Weak transcription Fetal Brain Male brain
9 chr3:24173600-24188200 Weak transcription Primary hematopoietic stem cells blood
10 chr3:24174400-24184800 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr3:24175800-24187800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr3:24176800-24186400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr3:24177200-24186200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr3:24177200-24186200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr3:24177200-24186200 Weak transcription Placenta Placenta
16 chr3:24178400-24183800 Enhancers Rectal Smooth Muscle rectum
17 chr3:24178400-24186200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr3:24178600-24185400 Strong transcription Adipose Nuclei Adipose
19 chr3:24179000-24186200 Weak transcription NHLF lung
20 chr3:24179800-24187800 Weak transcription Spleen Spleen
21 chr3:24180000-24185000 Weak transcription Gastric stomach
22 chr3:24180000-24185200 Weak transcription Lung lung
23 chr3:24180000-24186400 Weak transcription Duodenum Mucosa Duodenum
24 chr3:24180000-24206600 Weak transcription Pancreas Pancrea
25 chr3:24180200-24187000 Weak transcription Right Ventricle heart
26 chr3:24180400-24183600 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr3:24180400-24186200 Weak transcription Stomach Mucosa stomach
28 chr3:24180400-24186200 Weak transcription HSMMtube muscle
29 chr3:24180600-24186400 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr3:24180600-24186800 Weak transcription HMEC breast
31 chr3:24181200-24184200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr3:24181200-24184200 Weak transcription Left Ventricle heart
33 chr3:24181200-24186000 Weak transcription NHDF-Ad bronchial
34 chr3:24181200-24187800 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr3:24181200-24187800 Weak transcription Right Atrium heart
36 chr3:24181400-24187800 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr3:24181600-24183600 Weak transcription Brain Angular Gyrus brain
38 chr3:24181600-24184000 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr3:24181600-24186200 Weak transcription HSMM muscle
40 chr3:24182000-24186200 Weak transcription Muscle Satellite Cultured Cells --
41 chr3:24182000-24188000 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr3:24182000-24194400 Weak transcription Fetal Kidney kidney
43 chr3:24182200-24184200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr3:24182200-24185400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr3:24182400-24183800 Genic enhancers Colon Smooth Muscle Colon
46 chr3:24182400-24184600 Strong transcription HepG2 liver
47 chr3:24182400-24185000 Weak transcription Fetal Stomach stomach
48 chr3:24182400-24185400 Strong transcription Aorta Aorta
49 chr3:24182600-24185000 Strong transcription Fetal Lung lung
50 chr3:24182600-24185000 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015