The 2.0 version of rSNPBase

Variant report

Variant rs72619915
Chromosome Location chr3:24176687-24176688
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24156400-24187800 Weak transcription Brain Inferior Temporal Lobe brain
2 chr3:24162800-24178200 Weak transcription Spleen Spleen
3 chr3:24165800-24179000 Weak transcription Duodenum Mucosa Duodenum
4 chr3:24167000-24197800 Weak transcription K562 blood
5 chr3:24167800-24187800 Weak transcription Small Intestine intestine
6 chr3:24168600-24179200 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr3:24168800-24181200 Weak transcription Brain Angular Gyrus brain
8 chr3:24169000-24187800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr3:24169800-24186200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr3:24170000-24178200 Weak transcription Gastric stomach
11 chr3:24170200-24178200 Weak transcription Stomach Mucosa stomach
12 chr3:24170800-24184600 Weak transcription Brain Anterior Caudate brain
13 chr3:24171000-24177400 Strong transcription Fetal Intestine Small intestine
14 chr3:24171000-24178200 Weak transcription Muscle Satellite Cultured Cells --
15 chr3:24171200-24176800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:24171400-24186200 Strong transcription Fetal Intestine Large intestine
17 chr3:24171600-24178800 Weak transcription HMEC breast
18 chr3:24171600-24179200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr3:24172000-24178200 Weak transcription Psoas Muscle Psoas
20 chr3:24173000-24187400 Weak transcription Fetal Brain Male brain
21 chr3:24173600-24179000 Weak transcription HepG2 liver
22 chr3:24173600-24179400 Weak transcription Esophagus oesophagus
23 chr3:24173600-24188200 Weak transcription Primary hematopoietic stem cells blood
24 chr3:24173800-24183200 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr3:24174000-24183400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr3:24174200-24182800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr3:24174400-24184800 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr3:24174800-24177000 Genic enhancers Fetal Stomach stomach
29 chr3:24174800-24177400 Enhancers Colon Smooth Muscle Colon
30 chr3:24174800-24178400 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr3:24175000-24177200 Enhancers Rectal Smooth Muscle rectum
32 chr3:24175200-24177200 Enhancers Duodenum Smooth Muscle Duodenum
33 chr3:24175400-24177200 Enhancers Placenta Placenta
34 chr3:24175400-24179000 Weak transcription Left Ventricle heart
35 chr3:24175800-24187800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr3:24176200-24176800 Flanking Active TSS Stomach Smooth Muscle stomach
37 chr3:24176200-24177200 Enhancers Right Ventricle heart
38 chr3:24176200-24177200 Enhancers NHDF-Ad bronchial
39 chr3:24176200-24178200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr3:24176400-24176800 Genic enhancers Breast Myoepithelial Primary Cells Breast
41 chr3:24176400-24177200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr3:24176400-24177200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr3:24176400-24177200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr3:24176400-24177200 Enhancers Adipose Nuclei Adipose
45 chr3:24176400-24177200 Enhancers Aorta Aorta
46 chr3:24176400-24177200 Genic enhancers Fetal Lung lung
47 chr3:24176400-24177200 Enhancers NHLF lung
48 chr3:24176400-24179000 Weak transcription Lung lung
49 chr3:24176400-24179400 Weak transcription Liver Liver
50 chr3:24176600-24176800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015