Variant report

Variant	rs72628143
Chromosome Location	chr3:24110975-24110976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24040191..24040792-chr3:24110416..24111055,2	MCF-7	breast:
2	chr3:23957818..23960523-chr3:24109243..24112140,2	MCF-7	breast:
3	chr3:24110053..24112130-chr3:24113190..24114976,2	MCF-7	breast:
4	chr3:24110281..24111164-chr3:24722093..24722774,3	K562	blood:
5	chr3:24110646..24111147-chr3:24190699..24191477,2	K562	blood:

Variant related genes	Relation type
ENSG00000197885	Chromatin interaction
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs4858102	0.93[ASN][1000 genomes]
rs58349927	0.81[ASN][1000 genomes]
rs72617499	0.89[ASN][1000 genomes]
rs72617500	0.93[ASN][1000 genomes]
rs72617501	0.93[ASN][1000 genomes]
rs72617502	0.93[ASN][1000 genomes]
rs72619904	0.93[ASN][1000 genomes]
rs72619905	0.93[ASN][1000 genomes]
rs72619906	0.93[ASN][1000 genomes]
rs72619907	0.93[ASN][1000 genomes]
rs72619908	0.93[ASN][1000 genomes]
rs72619909	0.93[ASN][1000 genomes]
rs72619910	0.93[ASN][1000 genomes]
rs72619911	0.87[ASN][1000 genomes]
rs72619912	0.81[ASN][1000 genomes]
rs72619913	0.81[ASN][1000 genomes]
rs72619914	0.81[ASN][1000 genomes]
rs72619915	0.81[ASN][1000 genomes]
rs72619919	0.81[ASN][1000 genomes]
rs72619920	0.81[ASN][1000 genomes]
rs72628126	0.80[ASN][1000 genomes]
rs72628127	0.83[ASN][1000 genomes]
rs72628129	0.93[ASN][1000 genomes]
rs72628130	0.93[ASN][1000 genomes]
rs72628132	0.93[ASN][1000 genomes]
rs72628133	1.00[ASN][1000 genomes]
rs72628135	1.00[ASN][1000 genomes]
rs72628136	1.00[ASN][1000 genomes]
rs72628137	1.00[ASN][1000 genomes]
rs72628138	1.00[ASN][1000 genomes]
rs72628140	1.00[ASN][1000 genomes]
rs72628141	1.00[ASN][1000 genomes]
rs72628142	1.00[ASN][1000 genomes]
rs72628144	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv441813	chr3:24108071-24114939	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv818131	chr3:24109112-24113697	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24101400-24119200	Weak transcription	Aorta	Aorta
2	chr3:24108800-24115200	Weak transcription	Right Ventricle	heart
3	chr3:24110200-24111000	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:24110400-24111000	Enhancers	HSMM	muscle
5	chr3:24110400-24111600	Enhancers	Colon Smooth Muscle	Colon

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