Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24146957..24149628-chr3:24155407..24157243,2	MCF-7	breast:
2	chr3:24142494..24143999-chr3:24147403..24150339,2	K562	blood:

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13317815	0.82[CHB][hapmap]
rs2167116	0.86[CHB][hapmap]
rs58349927	0.87[ASN][1000 genomes]
rs6550849	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778577	0.82[CHB][hapmap]
rs72617499	0.96[ASN][1000 genomes]
rs72617500	1.00[ASN][1000 genomes]
rs72617501	1.00[ASN][1000 genomes]
rs72617502	1.00[ASN][1000 genomes]
rs72619904	1.00[ASN][1000 genomes]
rs72619905	1.00[ASN][1000 genomes]
rs72619906	1.00[ASN][1000 genomes]
rs72619907	1.00[ASN][1000 genomes]
rs72619908	1.00[ASN][1000 genomes]
rs72619909	0.93[ASN][1000 genomes]
rs72619910	0.93[ASN][1000 genomes]
rs72619911	0.93[ASN][1000 genomes]
rs72619912	0.87[ASN][1000 genomes]
rs72619913	0.87[ASN][1000 genomes]
rs72619914	0.87[ASN][1000 genomes]
rs72619915	0.87[ASN][1000 genomes]
rs72619916	0.84[ASN][1000 genomes]
rs72619919	0.87[ASN][1000 genomes]
rs72619920	0.87[ASN][1000 genomes]
rs72628129	0.86[ASN][1000 genomes]
rs72628130	0.86[ASN][1000 genomes]
rs72628132	0.86[ASN][1000 genomes]
rs72628133	0.93[ASN][1000 genomes]
rs72628135	0.93[ASN][1000 genomes]
rs72628136	0.93[ASN][1000 genomes]
rs72628137	0.93[ASN][1000 genomes]
rs72628138	0.93[ASN][1000 genomes]
rs72628140	0.93[ASN][1000 genomes]
rs72628141	0.93[ASN][1000 genomes]
rs72628142	0.93[ASN][1000 genomes]
rs72628143	0.93[ASN][1000 genomes]
rs72628144	0.93[ASN][1000 genomes]
rs73136661	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7628320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24147400-24148200	Enhancers	NHDF-Ad	bronchial

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