Variant report

Variant	rs2167116
Chromosome Location	chr3:24159008-24159009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24157117..24159322-chr3:24165644..24167732,2	MCF-7	breast:
2	chr3:24152256..24154912-chr3:24158314..24160502,3	K562	blood:
3	chr3:24153412..24157403-chr3:24157612..24160502,5	K562	blood:
4	chr3:23959037..23961561-chr3:24158942..24161503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1015922	0.94[EUR][1000 genomes]
rs12638750	0.88[EUR][1000 genomes]
rs1397878	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4858102	0.86[CHB][hapmap]
rs4858580	0.94[EUR][1000 genomes]
rs57902237	0.94[EUR][1000 genomes]
rs62253421	0.88[EUR][1000 genomes]
rs6550847	0.94[EUR][1000 genomes]
rs6794000	0.96[EUR][1000 genomes]
rs7625823	0.94[EUR][1000 genomes]
rs7634542	0.96[EUR][1000 genomes]
rs7635612	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9310728	0.83[EUR][1000 genomes]
rs9831916	0.92[EUR][1000 genomes]
rs9990311	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24148400-24163000	Weak transcription	Aorta	Aorta
3	chr3:24149000-24164000	Weak transcription	Left Ventricle	heart
4	chr3:24153800-24161000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24154000-24160200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:24154000-24160600	Weak transcription	NHDF-Ad	bronchial
7	chr3:24154000-24160800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:24154000-24161000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:24154200-24160000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:24155800-24164000	Weak transcription	Fetal Lung	lung
11	chr3:24155800-24169600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:24157000-24163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:24157400-24173000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:24158400-24161000	Weak transcription	Fetal Intestine Small	intestine
16	chr3:24158800-24169800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:24158800-24170200	Strong transcription	Liver	Liver
18	chr3:24159000-24161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:24159000-24161000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:24159000-24163000	Weak transcription	Fetal Intestine Large	intestine

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