Variant report

Variant	rs6550847
Chromosome Location	chr3:24141096-24141097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1015922	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12638750	0.90[EUR][1000 genomes]
rs1397878	0.92[EUR][1000 genomes]
rs1511539	0.95[ASN][1000 genomes]
rs2167116	0.94[EUR][1000 genomes]
rs4858580	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57902237	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253421	0.90[EUR][1000 genomes]
rs6782675	0.97[ASN][1000 genomes]
rs6794000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798478	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7625823	0.96[EUR][1000 genomes]
rs7634542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7635612	0.92[EUR][1000 genomes]
rs9310728	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9831916	0.94[EUR][1000 genomes]
rs9990311	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24137200-24142200	Weak transcription	A549	lung
2	chr3:24137800-24142800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:24138600-24142200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24139000-24141600	Weak transcription	Fetal Stomach	stomach
5	chr3:24139000-24141800	Weak transcription	Fetal Lung	lung
6	chr3:24139000-24142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:24139000-24142000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:24139000-24142000	Weak transcription	NHDF-Ad	bronchial
9	chr3:24139000-24142200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:24139000-24142200	Weak transcription	HSMM	muscle
11	chr3:24139000-24142800	Weak transcription	HSMMtube	muscle
12	chr3:24139400-24142600	Weak transcription	Right Atrium	heart
13	chr3:24141000-24141200	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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