Variant report

Variant	rs7634542
Chromosome Location	chr3:24144843-24144844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1015922	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12638750	0.92[EUR][1000 genomes]
rs1397878	0.94[EUR][1000 genomes]
rs2167116	0.96[EUR][1000 genomes]
rs4858580	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57902237	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62253421	0.92[EUR][1000 genomes]
rs6550847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6782675	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6794000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798478	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7428850	0.81[EUR][1000 genomes]
rs7625823	0.98[EUR][1000 genomes]
rs7635612	0.94[EUR][1000 genomes]
rs9310728	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9831916	0.96[EUR][1000 genomes]
rs9990311	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24144000-24145200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:24144400-24147400	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links