Variant report

Variant	rs7428850
Chromosome Location	chr3:24158397-24158398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1015922	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12638750	0.81[EUR][1000 genomes]
rs1397878	0.84[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs1511539	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4858580	0.83[EUR][1000 genomes]
rs56204436	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57902237	0.83[EUR][1000 genomes]
rs62253421	0.81[EUR][1000 genomes]
rs6782675	1.00[EUR][1000 genomes]
rs6794000	0.81[EUR][1000 genomes]
rs6798478	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625823	0.83[EUR][1000 genomes]
rs7634542	0.81[EUR][1000 genomes]
rs7635612	0.84[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs9831916	0.85[EUR][1000 genomes]
rs9990311	0.84[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24148400-24163000	Weak transcription	Aorta	Aorta
3	chr3:24149000-24164000	Weak transcription	Left Ventricle	heart
4	chr3:24153800-24161000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24154000-24160200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:24154000-24160600	Weak transcription	NHDF-Ad	bronchial
7	chr3:24154000-24160800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:24154000-24161000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:24154200-24160000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:24155800-24164000	Weak transcription	Fetal Lung	lung
11	chr3:24155800-24169600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:24156200-24158800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:24157000-24158600	Weak transcription	Fetal Intestine Large	intestine
15	chr3:24157000-24158800	Weak transcription	Liver	Liver
16	chr3:24157000-24163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:24157400-24173000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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