Variant report

Variant	rs6798478
Chromosome Location	chr3:24137455-24137456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1015922	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638750	0.81[EUR][1000 genomes]
rs1397878	0.82[EUR][1000 genomes]
rs1511539	0.98[EUR][1000 genomes]
rs4858580	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56204436	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57902237	0.83[EUR][1000 genomes]
rs62253421	0.81[EUR][1000 genomes]
rs6550847	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6782675	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794000	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7428850	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625823	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7634542	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7635612	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9310728	0.88[AMR][1000 genomes]
rs9831916	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9990311	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24137200-24142200	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links