Variant report

Variant	rs1511539
Chromosome Location	chr3:24152435-24152436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1015922	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2167116	0.81[JPT][hapmap]
rs4858580	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56204436	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57902237	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6550847	0.95[ASN][1000 genomes]
rs6782675	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6794000	0.95[ASN][1000 genomes]
rs6798478	0.98[EUR][1000 genomes]
rs7428850	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7625823	0.81[EUR][1000 genomes]
rs7635612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9831916	0.83[EUR][1000 genomes]
rs9990311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24148400-24163000	Weak transcription	Aorta	Aorta
3	chr3:24149000-24164000	Weak transcription	Left Ventricle	heart
4	chr3:24151200-24154000	Enhancers	NHDF-Ad	bronchial
5	chr3:24151200-24154200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:24151400-24153200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:24152400-24153200	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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