Variant report

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24141927..24144068-chr3:24144999..24146572,2	K562	blood:
2	chr3:24142494..24143999-chr3:24147403..24150339,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THRB-1	chr3:24141465-24143037	XLOC_003068
2	lnc-THRB-1	chr3:24141466-24143035	XLOC_003068
3	lnc-THRB-1	chr3:24141485-24143037	XLOC_003068
4	lnc-THRB-1	chr3:24141465-24143037	ENSG00000224074.2
5	lnc-THRB-1	chr3:24141932-24143037	ENSG00000224074.2
6	lnc-THRB-1	chr3:24141932-24143037	NONHSAT088693

No data

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1015922	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12638750	0.81[EUR][1000 genomes]
rs1397878	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511539	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858580	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56204436	0.95[EUR][1000 genomes]
rs57902237	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253421	0.81[EUR][1000 genomes]
rs6550847	0.97[ASN][1000 genomes]
rs6794000	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6798478	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7428850	1.00[EUR][1000 genomes]
rs7625823	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7634542	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7635612	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9831916	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9990311	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24141600-24144000	Enhancers	Fetal Stomach	stomach
2	chr3:24141800-24144000	Enhancers	Fetal Lung	lung
3	chr3:24141800-24144000	Enhancers	Stomach Smooth Muscle	stomach
4	chr3:24142000-24143200	Enhancers	Fetal Muscle Leg	muscle
5	chr3:24142000-24143600	Enhancers	NHLF	lung
6	chr3:24142000-24144000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:24142000-24144400	Enhancers	NHDF-Ad	bronchial
8	chr3:24142200-24143000	Flanking Active TSS	Liver	Liver
9	chr3:24142200-24143000	Flanking Active TSS	A549	lung
10	chr3:24142200-24143200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:24142200-24143200	Flanking Active TSS	HepG2	liver
12	chr3:24142200-24143800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:24142200-24144000	Enhancers	HSMM	muscle
14	chr3:24142400-24143000	Enhancers	Adipose Nuclei	Adipose
15	chr3:24142400-24144000	Enhancers	Hela-S3	cervix
16	chr3:24142600-24143000	Enhancers	Right Atrium	heart
17	chr3:24142800-24143400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:24142800-24143400	Enhancers	Psoas Muscle	Psoas
19	chr3:24142800-24143800	Enhancers	HSMMtube	muscle
20	chr3:24142800-24144000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:24142800-24144200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:24142800-24144400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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