Variant report

Variant	rs72628138
Chromosome Location	chr3:24104713-24104714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs4858102	0.93[ASN][1000 genomes]
rs58349927	0.81[ASN][1000 genomes]
rs72617499	0.89[ASN][1000 genomes]
rs72617500	0.93[ASN][1000 genomes]
rs72617501	0.93[ASN][1000 genomes]
rs72617502	0.93[ASN][1000 genomes]
rs72619904	0.93[ASN][1000 genomes]
rs72619905	0.93[ASN][1000 genomes]
rs72619906	0.93[ASN][1000 genomes]
rs72619907	0.93[ASN][1000 genomes]
rs72619908	0.93[ASN][1000 genomes]
rs72619909	0.93[ASN][1000 genomes]
rs72619910	0.93[ASN][1000 genomes]
rs72619911	0.87[ASN][1000 genomes]
rs72619912	0.81[ASN][1000 genomes]
rs72619913	0.81[ASN][1000 genomes]
rs72619914	0.81[ASN][1000 genomes]
rs72619915	0.81[ASN][1000 genomes]
rs72619919	0.81[ASN][1000 genomes]
rs72619920	0.81[ASN][1000 genomes]
rs72628126	0.80[ASN][1000 genomes]
rs72628127	0.83[ASN][1000 genomes]
rs72628129	0.93[ASN][1000 genomes]
rs72628130	0.93[ASN][1000 genomes]
rs72628132	0.93[ASN][1000 genomes]
rs72628133	1.00[ASN][1000 genomes]
rs72628135	1.00[ASN][1000 genomes]
rs72628136	1.00[ASN][1000 genomes]
rs72628137	1.00[ASN][1000 genomes]
rs72628140	1.00[ASN][1000 genomes]
rs72628141	1.00[ASN][1000 genomes]
rs72628142	1.00[ASN][1000 genomes]
rs72628143	1.00[ASN][1000 genomes]
rs72628144	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24101400-24119200	Weak transcription	Aorta	Aorta
2	chr3:24102200-24105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:24102200-24109200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24102200-24110400	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:24102400-24106800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:24103800-24105000	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:24104400-24104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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