Variant report
| Variant | rs72617502 |
|---|---|
| Chromosome Location | chr3:24147588-24147589 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC00691 | TF binding region |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs4858102 | 1.00[ASN][1000 genomes] |
| rs58349927 | 0.87[ASN][1000 genomes] |
| rs72617499 | 0.96[ASN][1000 genomes] |
| rs72617500 | 1.00[ASN][1000 genomes] |
| rs72617501 | 1.00[ASN][1000 genomes] |
| rs72619904 | 1.00[ASN][1000 genomes] |
| rs72619905 | 1.00[ASN][1000 genomes] |
| rs72619906 | 1.00[ASN][1000 genomes] |
| rs72619907 | 1.00[ASN][1000 genomes] |
| rs72619908 | 1.00[ASN][1000 genomes] |
| rs72619909 | 0.93[ASN][1000 genomes] |
| rs72619910 | 0.93[ASN][1000 genomes] |
| rs72619911 | 0.93[ASN][1000 genomes] |
| rs72619912 | 0.87[ASN][1000 genomes] |
| rs72619913 | 0.87[ASN][1000 genomes] |
| rs72619914 | 0.87[ASN][1000 genomes] |
| rs72619915 | 0.87[ASN][1000 genomes] |
| rs72619916 | 0.84[ASN][1000 genomes] |
| rs72619919 | 0.87[ASN][1000 genomes] |
| rs72619920 | 0.87[ASN][1000 genomes] |
| rs72628129 | 0.86[ASN][1000 genomes] |
| rs72628130 | 0.86[ASN][1000 genomes] |
| rs72628132 | 0.86[ASN][1000 genomes] |
| rs72628133 | 0.93[ASN][1000 genomes] |
| rs72628135 | 0.93[ASN][1000 genomes] |
| rs72628136 | 0.93[ASN][1000 genomes] |
| rs72628137 | 0.93[ASN][1000 genomes] |
| rs72628138 | 0.93[ASN][1000 genomes] |
| rs72628140 | 0.93[ASN][1000 genomes] |
| rs72628141 | 0.93[ASN][1000 genomes] |
| rs72628142 | 0.93[ASN][1000 genomes] |
| rs72628143 | 0.93[ASN][1000 genomes] |
| rs72628144 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533980 | chr3:23445901-24311972 | ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
| 2 | nsv834639 | chr3:24037113-24233925 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24143800-24160800 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr3:24147400-24148200 | Enhancers | NHDF-Ad | bronchial |
