Variant report

Variant	rs9825549
Chromosome Location	chr3:24188979-24188980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24184707..24186522-chr3:24187478..24189603,2	K562	blood:
2	chr3:24184707..24186560-chr3:24186886..24189603,2	K562	blood:
3	chr3:24187851..24190710-chr3:24194476..24197652,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57873895	0.96[AFR][1000 genomes]
rs58349927	0.96[AFR][1000 genomes]
rs59652237	1.00[AFR][1000 genomes]
rs6795041	1.00[AFR][1000 genomes]
rs72619920	0.96[AFR][1000 genomes]
rs9863267	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24167000-24197800	Weak transcription	K562	blood
2	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
3	chr3:24182000-24194400	Weak transcription	Fetal Kidney	kidney
4	chr3:24183400-24198000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:24184600-24196200	Weak transcription	HepG2	liver
6	chr3:24185000-24193200	Weak transcription	Fetal Lung	lung
7	chr3:24185400-24193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:24185400-24195200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:24186600-24189200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:24187600-24190800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:24187800-24197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:24188000-24189400	Enhancers	Hela-S3	cervix
14	chr3:24188000-24189600	Enhancers	NHLF	lung
15	chr3:24188000-24193600	Weak transcription	Spleen	Spleen
16	chr3:24188000-24202200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:24188200-24189000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:24188200-24189200	Enhancers	HSMM	muscle
19	chr3:24188200-24189200	Enhancers	Osteobl	bone
20	chr3:24188200-24189400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:24188200-24189400	Enhancers	NHDF-Ad	bronchial
22	chr3:24188200-24189600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:24188200-24189600	Enhancers	HSMMtube	muscle
24	chr3:24188200-24190200	Weak transcription	Adipose Nuclei	Adipose
25	chr3:24188200-24190400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:24188200-24190800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:24188200-24190800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:24188200-24192600	Weak transcription	Ovary	ovary
29	chr3:24188200-24193200	Weak transcription	Psoas Muscle	Psoas
30	chr3:24188200-24193200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:24188200-24196400	Weak transcription	Aorta	Aorta
32	chr3:24188200-24197200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:24188200-24201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
35	chr3:24188200-24203600	Weak transcription	Liver	Liver
36	chr3:24188200-24210000	Weak transcription	Gastric	stomach
37	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
38	chr3:24188400-24189200	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:24188400-24189200	Weak transcription	Fetal Intestine Small	intestine
40	chr3:24188400-24198000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:24188600-24189200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:24188600-24189800	Weak transcription	Placenta	Placenta
43	chr3:24188600-24191800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:24188800-24189200	Enhancers	Fetal Brain Male	brain

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