Variant report

Variant	rs73136652
Chromosome Location	chr3:24139677-24139678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57873895	1.00[AMR][1000 genomes]
rs58349927	1.00[AMR][1000 genomes]
rs59652237	1.00[AMR][1000 genomes]
rs62253675	1.00[AMR][1000 genomes]
rs6795041	1.00[AMR][1000 genomes]
rs72619920	1.00[AMR][1000 genomes]
rs73136672	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv965149	chr3:24138426-24140099	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24137200-24142200	Weak transcription	A549	lung
2	chr3:24137800-24142800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:24138400-24139800	Enhancers	Aorta	Aorta
4	chr3:24138600-24142200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:24139000-24141600	Weak transcription	Fetal Stomach	stomach
6	chr3:24139000-24141800	Weak transcription	Fetal Lung	lung
7	chr3:24139000-24142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:24139000-24142000	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:24139000-24142000	Weak transcription	NHDF-Ad	bronchial
10	chr3:24139000-24142200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:24139000-24142200	Weak transcription	HSMM	muscle
12	chr3:24139000-24142800	Weak transcription	HSMMtube	muscle
13	chr3:24139400-24142600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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