The 2.0 version of rSNPBase

Variant report

Variant rs72627100
Chromosome Location chr3:23996056-23996057
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23988200-24000600 Weak transcription Fetal Brain Male brain
2 chr3:23988200-24003600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:23988400-23996400 Enhancers Primary T helper naive cells from peripheral blood blood
4 chr3:23988400-24003000 Weak transcription Fetal Muscle Trunk muscle
5 chr3:23988400-24003400 Weak transcription Fetal Kidney kidney
6 chr3:23989000-23996400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr3:23989000-23997800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr3:23989000-23998200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr3:23989200-23996200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr3:23989200-23996200 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr3:23989200-24000600 Weak transcription Placenta Amnion Placenta Amnion
12 chr3:23989200-24003000 Weak transcription Fetal Thymus thymus
13 chr3:23989200-24007400 Weak transcription Fetal Brain Female brain
14 chr3:23989200-24018000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr3:23989200-24020600 Weak transcription H9 Cell Line embryonic stem cell
16 chr3:23989200-24033200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr3:23989400-23996200 Enhancers Brain Hippocampus Middle brain
18 chr3:23989600-24003400 Weak transcription H1 Cell Line embryonic stem cell
19 chr3:23989600-24003400 Weak transcription Esophagus oesophagus
20 chr3:23989600-24003600 Weak transcription Colonic Mucosa Colon
21 chr3:23989800-24017800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr3:23990000-24000200 Weak transcription HUVEC blood vessel
23 chr3:23990000-24001000 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr3:23990400-23996200 Weak transcription Placenta Placenta
25 chr3:23990400-23997600 Weak transcription NH-A brain
26 chr3:23990600-23999800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr3:23991000-23996400 Enhancers Brain Cingulate Gyrus brain
28 chr3:23991600-23996200 Weak transcription Fetal Muscle Leg muscle
29 chr3:23991800-23996200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr3:23991800-23996200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr3:23991800-23996400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr3:23991800-23999600 Weak transcription HSMMtube muscle
33 chr3:23992000-23996200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr3:23992000-23996400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr3:23992000-24000000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr3:23992000-24001600 Weak transcription Fetal Stomach stomach
37 chr3:23992000-24007400 Weak transcription Thymus Thymus
38 chr3:23992200-23998400 Weak transcription Fetal Intestine Small intestine
39 chr3:23992200-24000200 Weak transcription HMEC breast
40 chr3:23992200-24000400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr3:23992200-24001200 Weak transcription Fetal Intestine Large intestine
42 chr3:23992200-24001400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr3:23992400-23996200 Weak transcription Primary T cells from cord blood blood
44 chr3:23992400-24002400 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr3:23992400-24003400 Weak transcription Primary monocytes fromperipheralblood blood
46 chr3:23992400-24003400 Weak transcription Primary hematopoietic stem cells blood
47 chr3:23992400-24003400 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr3:23992400-24017400 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr3:23993200-23999400 Weak transcription Fetal Lung lung
50 chr3:23993200-23999600 Weak transcription A549 lung

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Last update: Aug 31, 2015