The 2.0 version of rSNPBase

Variant report

Variant rs72627102
Chromosome Location chr3:23998100-23998101
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23988200-24000600 Weak transcription Fetal Brain Male brain
2 chr3:23988200-24003600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:23988400-24003000 Weak transcription Fetal Muscle Trunk muscle
4 chr3:23988400-24003400 Weak transcription Fetal Kidney kidney
5 chr3:23989000-23998200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr3:23989200-24000600 Weak transcription Placenta Amnion Placenta Amnion
7 chr3:23989200-24003000 Weak transcription Fetal Thymus thymus
8 chr3:23989200-24007400 Weak transcription Fetal Brain Female brain
9 chr3:23989200-24018000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr3:23989200-24020600 Weak transcription H9 Cell Line embryonic stem cell
11 chr3:23989200-24033200 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr3:23989600-24003400 Weak transcription H1 Cell Line embryonic stem cell
13 chr3:23989600-24003400 Weak transcription Esophagus oesophagus
14 chr3:23989600-24003600 Weak transcription Colonic Mucosa Colon
15 chr3:23989800-24017800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr3:23990000-24000200 Weak transcription HUVEC blood vessel
17 chr3:23990000-24001000 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr3:23990600-23999800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr3:23991800-23999600 Weak transcription HSMMtube muscle
20 chr3:23992000-24000000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr3:23992000-24001600 Weak transcription Fetal Stomach stomach
22 chr3:23992000-24007400 Weak transcription Thymus Thymus
23 chr3:23992200-23998400 Weak transcription Fetal Intestine Small intestine
24 chr3:23992200-24000200 Weak transcription HMEC breast
25 chr3:23992200-24000400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr3:23992200-24001200 Weak transcription Fetal Intestine Large intestine
27 chr3:23992200-24001400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:23992400-24002400 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr3:23992400-24003400 Weak transcription Primary monocytes fromperipheralblood blood
30 chr3:23992400-24003400 Weak transcription Primary hematopoietic stem cells blood
31 chr3:23992400-24003400 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr3:23992400-24017400 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr3:23993200-23999400 Weak transcription Fetal Lung lung
34 chr3:23993200-23999600 Weak transcription A549 lung
35 chr3:23993400-23999400 Weak transcription NHLF lung
36 chr3:23993600-23999600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr3:23993600-24000200 Weak transcription NHEK skin
38 chr3:23993600-24000400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:23993600-24009400 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr3:23993600-24017800 Weak transcription Brain Germinal Matrix brain
41 chr3:23993800-23999600 Weak transcription Gastric stomach
42 chr3:23993800-23999600 Weak transcription Pancreas Pancrea
43 chr3:23993800-24001000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr3:23994000-24022800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr3:23994600-23998600 Enhancers Stomach Mucosa stomach
46 chr3:23995200-24003200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr3:23995200-24003200 Weak transcription Dnd41 blood
48 chr3:23995200-24003400 Weak transcription GM12878-XiMat blood
49 chr3:23995600-23999600 Weak transcription Spleen Spleen
50 chr3:23995600-24000800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015