The 2.0 version of rSNPBase

Variant report

Variant rs72627098
Chromosome Location chr3:23995179-23995180
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23988200-24000600 Weak transcription Fetal Brain Male brain
2 chr3:23988200-24003600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:23988400-23995200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
4 chr3:23988400-23996000 Enhancers Primary T helper 17 cells PMA-I stimulated --
5 chr3:23988400-23996400 Enhancers Primary T helper naive cells from peripheral blood blood
6 chr3:23988400-24003000 Weak transcription Fetal Muscle Trunk muscle
7 chr3:23988400-24003400 Weak transcription Fetal Kidney kidney
8 chr3:23988600-23996000 Enhancers Primary T helper cells fromperipheralblood blood
9 chr3:23989000-23996400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr3:23989000-23997800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr3:23989000-23998200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr3:23989200-23996000 Enhancers Adipose Nuclei Adipose
13 chr3:23989200-23996200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr3:23989200-23996200 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr3:23989200-24000600 Weak transcription Placenta Amnion Placenta Amnion
16 chr3:23989200-24003000 Weak transcription Fetal Thymus thymus
17 chr3:23989200-24007400 Weak transcription Fetal Brain Female brain
18 chr3:23989200-24018000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr3:23989200-24020600 Weak transcription H9 Cell Line embryonic stem cell
20 chr3:23989200-24033200 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr3:23989400-23996000 Weak transcription HUES48 Cell Line embryonic stem cell
22 chr3:23989400-23996200 Enhancers Brain Hippocampus Middle brain
23 chr3:23989600-24003400 Weak transcription H1 Cell Line embryonic stem cell
24 chr3:23989600-24003400 Weak transcription Esophagus oesophagus
25 chr3:23989600-24003600 Weak transcription Colonic Mucosa Colon
26 chr3:23989800-23995600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
27 chr3:23989800-23996000 Weak transcription Osteobl bone
28 chr3:23989800-24017800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr3:23990000-24000200 Weak transcription HUVEC blood vessel
30 chr3:23990000-24001000 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr3:23990400-23995400 Weak transcription Aorta Aorta
32 chr3:23990400-23996200 Weak transcription Placenta Placenta
33 chr3:23990400-23997600 Weak transcription NH-A brain
34 chr3:23990600-23995600 Enhancers Primary T killer naive cells fromperipheralblood blood
35 chr3:23990600-23999800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr3:23990800-23995800 Enhancers Primary B cells from cord blood blood
37 chr3:23991000-23996000 Enhancers Primary B cells from peripheral blood blood
38 chr3:23991000-23996400 Enhancers Brain Cingulate Gyrus brain
39 chr3:23991400-23996000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr3:23991600-23996000 Enhancers Colon Smooth Muscle Colon
41 chr3:23991600-23996200 Weak transcription Fetal Muscle Leg muscle
42 chr3:23991800-23995600 Weak transcription Primary T cells fromperipheralblood blood
43 chr3:23991800-23996200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr3:23991800-23996200 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr3:23991800-23996400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr3:23991800-23999600 Weak transcription HSMMtube muscle
47 chr3:23992000-23996000 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr3:23992000-23996000 Weak transcription Hela-S3 cervix
49 chr3:23992000-23996000 Weak transcription HSMM muscle
50 chr3:23992000-23996200 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015