Variant report

Variant	rs6803587
Chromosome Location	chr3:23987932-23987933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:23849969..23852479-chr3:23986397..23988332,3	K562	blood:
2	chr15:78422464..78425441-chr3:23985742..23987944,2	MCF-7	breast:
3	chr3:23846531..23848270-chr3:23987055..23988984,2	MCF-7	breast:
4	chr3:23954505..23971330-chr3:23977357..23992645,61	MCF-7	breast:
5	chr3:23986158..23988420-chr3:24004373..24006448,3	MCF-7	breast:
6	chr3:23987103..23988093-chr6:56911476..56911991,2	Hela-S3	cervix:
7	chr3:23956631..23966740-chr3:23975650..23993173,64	MCF-7	breast:
8	chr3:23985538..23993367-chr3:23993730..24003801,19	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000197885	Chromatin interaction
ENSG00000168116	Chromatin interaction
ENSG00000170142	Chromatin interaction
ENSG00000136425	Chromatin interaction
ENSG00000174738	Chromatin interaction
ENSG00000166411	Chromatin interaction

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10084748	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11129128	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13087250	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13316457	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13317815	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321439	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321440	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533141	0.87[EUR][1000 genomes]
rs1567579	0.92[EUR][1000 genomes]
rs1567580	0.92[EUR][1000 genomes]
rs2360020	0.87[ASN][1000 genomes]
rs28524116	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34036067	0.83[EUR][1000 genomes]
rs34058540	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34082882	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34593533	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34866549	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35136361	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35457462	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35755171	0.84[EUR][1000 genomes]
rs35755253	0.84[EUR][1000 genomes]
rs36063721	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36089963	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3762775	0.83[EUR][1000 genomes]
rs3935253	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4131404	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4132595	0.93[ASN][1000 genomes]
rs4300960	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4490300	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4602333	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4858096	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858564	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59090179	0.83[ASN][1000 genomes]
rs6550808	0.83[EUR][1000 genomes]
rs66609380	0.87[EUR][1000 genomes]
rs67002637	0.81[EUR][1000 genomes]
rs67465878	0.83[ASN][1000 genomes]
rs67606949	0.85[EUR][1000 genomes]
rs6770052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790140	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71324126	0.87[EUR][1000 genomes]
rs72627028	0.80[ASN][1000 genomes]
rs72627029	0.80[ASN][1000 genomes]
rs72627030	0.80[ASN][1000 genomes]
rs72627031	0.80[ASN][1000 genomes]
rs72627032	0.80[ASN][1000 genomes]
rs72627033	0.80[ASN][1000 genomes]
rs72627034	0.80[ASN][1000 genomes]
rs72627035	0.80[ASN][1000 genomes]
rs72627036	0.80[ASN][1000 genomes]
rs72627037	0.80[ASN][1000 genomes]
rs72627038	0.80[ASN][1000 genomes]
rs72627039	0.80[ASN][1000 genomes]
rs72627040	0.80[ASN][1000 genomes]
rs72627043	0.80[ASN][1000 genomes]
rs72627044	0.87[ASN][1000 genomes]
rs72627046	0.87[ASN][1000 genomes]
rs72627047	0.83[ASN][1000 genomes]
rs72627048	0.83[ASN][1000 genomes]
rs72627049	0.83[ASN][1000 genomes]
rs72627050	0.83[ASN][1000 genomes]
rs72627051	0.87[ASN][1000 genomes]
rs72627052	0.87[ASN][1000 genomes]
rs72627053	0.87[ASN][1000 genomes]
rs72627055	0.87[ASN][1000 genomes]
rs72627056	0.87[ASN][1000 genomes]
rs72627057	0.87[ASN][1000 genomes]
rs72627058	0.87[ASN][1000 genomes]
rs72627059	0.87[ASN][1000 genomes]
rs72627060	0.87[ASN][1000 genomes]
rs72627061	0.87[ASN][1000 genomes]
rs72627062	0.87[ASN][1000 genomes]
rs72627063	0.87[ASN][1000 genomes]
rs72627064	0.87[ASN][1000 genomes]
rs72627065	0.87[ASN][1000 genomes]
rs72627067	0.87[ASN][1000 genomes]
rs72627068	0.87[ASN][1000 genomes]
rs72627069	0.87[ASN][1000 genomes]
rs72627070	0.87[ASN][1000 genomes]
rs72627071	0.87[ASN][1000 genomes]
rs72627072	0.87[ASN][1000 genomes]
rs72627073	0.87[ASN][1000 genomes]
rs72627074	0.87[ASN][1000 genomes]
rs72627075	0.87[ASN][1000 genomes]
rs72627076	0.87[ASN][1000 genomes]
rs72627078	0.86[ASN][1000 genomes]
rs72627079	0.87[ASN][1000 genomes]
rs72627080	0.87[ASN][1000 genomes]
rs72627081	0.87[ASN][1000 genomes]
rs72627082	0.87[ASN][1000 genomes]
rs72627083	0.87[ASN][1000 genomes]
rs72627084	0.87[ASN][1000 genomes]
rs72627085	0.87[ASN][1000 genomes]
rs72627086	0.87[ASN][1000 genomes]
rs72627087	0.87[ASN][1000 genomes]
rs72627088	0.87[ASN][1000 genomes]
rs72627089	0.87[ASN][1000 genomes]
rs72627090	0.87[ASN][1000 genomes]
rs72627091	0.90[ASN][1000 genomes]
rs72627094	0.94[AMR][1000 genomes]
rs72627096	0.97[ASN][1000 genomes]
rs72627097	0.97[ASN][1000 genomes]
rs72627098	0.97[ASN][1000 genomes]
rs72627099	0.97[ASN][1000 genomes]
rs72627100	0.90[ASN][1000 genomes]
rs72627101	0.90[ASN][1000 genomes]
rs72627102	0.90[ASN][1000 genomes]
rs72628103	0.90[ASN][1000 genomes]
rs72628104	0.90[ASN][1000 genomes]
rs72628105	0.90[ASN][1000 genomes]
rs72628106	0.90[ASN][1000 genomes]
rs72628107	0.90[ASN][1000 genomes]
rs72628108	0.90[ASN][1000 genomes]
rs72628109	0.90[ASN][1000 genomes]
rs72628111	0.90[ASN][1000 genomes]
rs72628112	0.87[ASN][1000 genomes]
rs72628113	0.87[ASN][1000 genomes]
rs72628114	0.87[ASN][1000 genomes]
rs72628115	0.87[ASN][1000 genomes]
rs72628116	0.87[ASN][1000 genomes]
rs72628119	0.83[ASN][1000 genomes]
rs72628123	0.83[ASN][1000 genomes]
rs72628124	0.83[ASN][1000 genomes]
rs72628126	0.87[ASN][1000 genomes]
rs73150266	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73150299	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs954748	0.94[EUR][1000 genomes]
rs9809225	0.85[EUR][1000 genomes]
rs9812870	0.83[EUR][1000 genomes]
rs9817923	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853954	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9855481	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9863176	0.85[EUR][1000 genomes]
rs9883834	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3449153	chr3:23984948-23988646	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	esv3406325	chr3:23985473-23988321	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3425301	chr3:23985548-23988496	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23985600-23988200	Active TSS	Fetal Kidney	kidney
2	chr3:23985600-23988400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:23985600-23988800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr3:23985800-23988000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr3:23985800-23988000	Active TSS	Brain Substantia Nigra	brain
6	chr3:23985800-23988200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:23985800-23988200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:23985800-23988200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr3:23985800-23988200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr3:23985800-23988200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:23985800-23988200	Active TSS	Lung	lung
12	chr3:23985800-23988400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:23985800-23988400	Active TSS	Fetal Brain Female	brain
14	chr3:23985800-23988400	Active TSS	Psoas Muscle	Psoas
15	chr3:23985800-23988600	Active TSS	Brain Anterior Caudate	brain
16	chr3:23985800-23988800	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr3:23986000-23988000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:23986000-23988000	Active TSS	Left Ventricle	heart
19	chr3:23986000-23988000	Active TSS	NHEK	skin
20	chr3:23986000-23988200	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr3:23986000-23988200	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr3:23986000-23988200	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr3:23986000-23988200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:23986000-23988200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:23986000-23988200	Active TSS	Colon Smooth Muscle	Colon
26	chr3:23986000-23988200	Active TSS	Placenta Amnion	Placenta Amnion
27	chr3:23986000-23988400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:23986000-23988400	Active TSS	Right Ventricle	heart
29	chr3:23986000-23988600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:23986000-23988600	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr3:23986000-23988600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr3:23986000-23988800	Active TSS	Aorta	Aorta
33	chr3:23986000-23988800	Active TSS	Ovary	ovary
34	chr3:23986200-23988000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:23986200-23988000	Active TSS	Primary B cells from cord blood	blood
36	chr3:23986200-23988000	Active TSS	Primary B cells from peripheral blood	blood
37	chr3:23986200-23988000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:23986200-23988000	Active TSS	Adipose Nuclei	Adipose
39	chr3:23986200-23988000	Active TSS	Brain Angular Gyrus	brain
40	chr3:23986200-23988000	Active TSS	Brain Hippocampus Middle	brain
41	chr3:23986200-23988000	Active TSS	Duodenum Mucosa	Duodenum
42	chr3:23986200-23988000	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr3:23986200-23988000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr3:23986200-23988000	Active TSS	A549	lung
45	chr3:23986200-23988000	Active TSS	Hela-S3	cervix
46	chr3:23986200-23988000	Active TSS	HMEC	breast
47	chr3:23986200-23988000	Active TSS	HUVEC	blood vessel
48	chr3:23986200-23988000	Active TSS	K562	blood
49	chr3:23986200-23988000	Active TSS	Monocytes-CD14+_RO01746	blood
50	chr3:23986200-23988000	Active TSS	NHLF	lung

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