Variant report

Variant	rs1567580
Chromosome Location	chr3:24036772-24036773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24033094..24034761-chr3:24035791..24038107,2	K562	blood:
2	chr3:24030711..24032570-chr3:24036287..24038939,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10084748	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037635	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11129128	0.90[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915299	0.83[EUR][1000 genomes]
rs13070128	1.00[ASN][1000 genomes]
rs13087250	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13316457	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317815	0.80[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs13321439	0.92[EUR][1000 genomes]
rs13321440	0.92[EUR][1000 genomes]
rs1533141	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1567579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28524116	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34036067	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34058540	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34082882	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34593533	0.92[EUR][1000 genomes]
rs34866549	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953164	1.00[ASN][1000 genomes]
rs35136361	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35457462	0.89[EUR][1000 genomes]
rs35755171	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35755253	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36063721	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089963	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762775	0.90[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935253	0.80[CEU][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131404	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4300960	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4490300	0.80[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535169	1.00[ASN][1000 genomes]
rs4602333	0.82[ASW][hapmap];0.90[CEU][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858096	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858099	0.84[AMR][1000 genomes]
rs4858554	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4858556	1.00[ASN][1000 genomes]
rs4858564	0.80[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858571	0.81[AMR][1000 genomes]
rs55932805	1.00[ASN][1000 genomes]
rs6550808	0.90[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66609380	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67002637	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67236598	1.00[ASN][1000 genomes]
rs67606949	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767005	1.00[ASN][1000 genomes]
rs6770052	0.92[EUR][1000 genomes]
rs6775878	1.00[ASN][1000 genomes]
rs6776201	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6776568	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6778577	0.80[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs6790140	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791805	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6803214	1.00[ASN][1000 genomes]
rs6803587	0.92[EUR][1000 genomes]
rs71324126	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150266	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150299	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426647	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7434131	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7610689	1.00[ASN][1000 genomes]
rs7610935	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7611018	1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs954748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809225	0.90[CEU][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812419	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9812870	0.87[EUR][1000 genomes]
rs9817923	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9853954	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855481	0.90[CEU][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859567	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9863176	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875577	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882067	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9883834	0.90[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24019600-24040800	Weak transcription	NHLF	lung
2	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:24032800-24036800	Enhancers	Fetal Heart	heart
4	chr3:24033600-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:24033600-24040600	Weak transcription	Primary B cells from cord blood	blood
6	chr3:24033800-24040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:24034200-24036800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:24034200-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:24034600-24037200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:24034600-24040400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:24035200-24040600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:24035400-24037400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:24035800-24037400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:24035800-24040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:24035800-24040600	Weak transcription	Brain Angular Gyrus	brain
16	chr3:24036000-24037200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:24036000-24037200	Weak transcription	Fetal Lung	lung
18	chr3:24036000-24038200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:24036000-24040400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:24036000-24040400	Weak transcription	HSMMtube	muscle
21	chr3:24036000-24040400	Weak transcription	NHDF-Ad	bronchial
22	chr3:24036000-24040600	Weak transcription	Brain Germinal Matrix	brain
23	chr3:24036000-24040600	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:24036000-24040600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:24036000-24040600	Weak transcription	Brain Substantia Nigra	brain
26	chr3:24036000-24040800	Weak transcription	Ovary	ovary
27	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
28	chr3:24036200-24040400	Weak transcription	Adipose Nuclei	Adipose
29	chr3:24036200-24040600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:24036200-24040600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:24036200-24040600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:24036200-24040600	Weak transcription	Fetal Kidney	kidney
33	chr3:24036200-24040600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:24036200-24040600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:24036200-24040800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:24036400-24040400	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:24036400-24040800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:24036400-24043600	Weak transcription	Aorta	Aorta
39	chr3:24036600-24037000	Weak transcription	Fetal Stomach	stomach
40	chr3:24036600-24038000	Weak transcription	Primary hematopoietic stem cells	blood

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