The 2.0 version of rSNPBase

Variant report

Variant rs55932805
Chromosome Location chr3:23856621-23856622
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23852800-23859600 Weak transcription Gastric stomach
2 chr3:23853000-23857000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr3:23853000-23857000 Weak transcription Brain Hippocampus Middle brain
4 chr3:23853000-23857000 Weak transcription NHLF lung
5 chr3:23853000-23857400 Weak transcription Colonic Mucosa Colon
6 chr3:23853000-23858000 Weak transcription Lung lung
7 chr3:23853000-23859000 Weak transcription Placenta Placenta
8 chr3:23853000-23860000 Weak transcription Pancreas Pancrea
9 chr3:23853000-23860800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr3:23853000-23861000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr3:23853000-23861200 Weak transcription Left Ventricle heart
12 chr3:23853000-23861400 Weak transcription H9 Cell Line embryonic stem cell
13 chr3:23853000-23862400 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr3:23853000-23862600 Weak transcription Ovary ovary
15 chr3:23853000-23862800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:23853000-23865800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:23853000-23866200 Weak transcription Placenta Amnion Placenta Amnion
18 chr3:23853000-23867200 Weak transcription Aorta Aorta
19 chr3:23853000-23867800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr3:23853000-23867800 Weak transcription Primary T cells fromperipheralblood blood
21 chr3:23853000-23867800 Weak transcription Esophagus oesophagus
22 chr3:23853000-23867800 Weak transcription Fetal Brain Female brain
23 chr3:23853000-23867800 Weak transcription Right Atrium heart
24 chr3:23853000-23868000 Weak transcription NH-A brain
25 chr3:23853000-23868400 Weak transcription HSMMtube muscle
26 chr3:23853000-23876000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr3:23853000-23876000 Weak transcription Fetal Stomach stomach
28 chr3:23853000-23882000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr3:23853000-23887400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr3:23853200-23857000 Weak transcription Brain Substantia Nigra brain
31 chr3:23853200-23858400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr3:23853200-23859400 Weak transcription Muscle Satellite Cultured Cells --
33 chr3:23853200-23861000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr3:23853200-23861000 Weak transcription Brain Germinal Matrix brain
35 chr3:23853200-23861200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr3:23853200-23861200 Weak transcription Stomach Smooth Muscle stomach
37 chr3:23853200-23893200 Weak transcription Thymus Thymus
38 chr3:23853400-23857000 Weak transcription Brain Angular Gyrus brain
39 chr3:23853400-23857000 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr3:23853400-23857400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr3:23853400-23859600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr3:23853400-23864400 Weak transcription H1 Cell Line embryonic stem cell
43 chr3:23853400-23866000 Weak transcription HMEC breast
44 chr3:23853400-23867400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr3:23853400-23885600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr3:23853600-23856800 Weak transcription Primary T cells from cord blood blood
47 chr3:23853600-23856800 Weak transcription Duodenum Mucosa Duodenum
48 chr3:23853600-23856800 Strong transcription Fetal Thymus thymus
49 chr3:23853600-23857000 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr3:23853600-23857200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015