The 2.0 version of rSNPBase

Variant report

Variant rs6775878
Chromosome Location chr3:23892673-23892674
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23853200-23893200 Weak transcription Thymus Thymus
2 chr3:23855000-23900200 Weak transcription HSMM muscle
3 chr3:23857600-23894000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr3:23857600-23900000 Weak transcription Fetal Muscle Trunk muscle
5 chr3:23868000-23897800 Weak transcription HUVEC blood vessel
6 chr3:23868200-23893000 Weak transcription Fetal Thymus thymus
7 chr3:23871200-23899000 Weak transcription Pancreas Pancrea
8 chr3:23871400-23897400 Weak transcription Primary T cells from cord blood blood
9 chr3:23872000-23897400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr3:23873800-23893000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr3:23873800-23898000 Weak transcription NHEK skin
12 chr3:23876800-23906800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr3:23878400-23898000 Weak transcription Liver Liver
14 chr3:23878600-23900400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr3:23878800-23893800 Weak transcription Fetal Stomach stomach
16 chr3:23878800-23900200 Weak transcription Fetal Kidney kidney
17 chr3:23879000-23898000 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr3:23879000-23898200 Weak transcription Right Atrium heart
19 chr3:23879000-23907400 Weak transcription K562 blood
20 chr3:23879200-23898200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr3:23879400-23893000 Weak transcription Primary B cells from cord blood blood
22 chr3:23882200-23895000 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr3:23882200-23897800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr3:23882200-23905600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr3:23882400-23894000 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr3:23882400-23894000 Weak transcription Fetal Intestine Large intestine
27 chr3:23882400-23897800 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr3:23882400-23898000 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr3:23882600-23900600 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr3:23882800-23892800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr3:23882800-23898000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr3:23882800-23906000 Weak transcription HepG2 liver
33 chr3:23884000-23897800 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr3:23884800-23897800 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr3:23885000-23892800 Weak transcription A549 lung
36 chr3:23885000-23898000 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr3:23885400-23898000 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr3:23885800-23898000 Weak transcription NHLF lung
39 chr3:23887000-23893200 Weak transcription Primary hematopoietic stem cells blood
40 chr3:23887000-23893400 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr3:23887000-23897800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr3:23887000-23898600 Weak transcription Duodenum Mucosa Duodenum
43 chr3:23887200-23893400 Weak transcription Fetal Lung lung
44 chr3:23887200-23897400 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr3:23887600-23893200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr3:23887600-23897400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr3:23888200-23900600 Weak transcription Ovary ovary
48 chr3:23888600-23894800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr3:23890000-23893400 Weak transcription Left Ventricle heart
50 chr3:23890200-23894200 ZNF genes & repeats GM12878-XiMat blood

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Last update: Aug 31, 2015