Variant report

Variant	rs72628123
Chromosome Location	chr3:24063361-24063362
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13317815	0.83[ASN][1000 genomes]
rs13321439	0.83[ASN][1000 genomes]
rs13321440	0.83[ASN][1000 genomes]
rs17013996	1.00[EUR][1000 genomes]
rs17014013	1.00[EUR][1000 genomes]
rs34593533	0.83[ASN][1000 genomes]
rs35457462	0.81[ASN][1000 genomes]
rs4132595	0.83[ASN][1000 genomes]
rs59090179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67465878	1.00[ASN][1000 genomes]
rs6770052	0.83[ASN][1000 genomes]
rs6778577	0.83[ASN][1000 genomes]
rs6803587	0.83[ASN][1000 genomes]
rs72627091	0.80[ASN][1000 genomes]
rs72627096	0.86[ASN][1000 genomes]
rs72627097	0.86[ASN][1000 genomes]
rs72627098	0.86[ASN][1000 genomes]
rs72627099	0.86[ASN][1000 genomes]
rs72627100	0.93[ASN][1000 genomes]
rs72627101	0.93[ASN][1000 genomes]
rs72627102	0.93[ASN][1000 genomes]
rs72628103	0.93[ASN][1000 genomes]
rs72628104	0.93[ASN][1000 genomes]
rs72628105	0.93[ASN][1000 genomes]
rs72628106	0.93[ASN][1000 genomes]
rs72628107	0.93[ASN][1000 genomes]
rs72628108	0.93[ASN][1000 genomes]
rs72628109	0.93[ASN][1000 genomes]
rs72628111	0.93[ASN][1000 genomes]
rs72628112	0.96[ASN][1000 genomes]
rs72628113	0.96[ASN][1000 genomes]
rs72628114	0.96[ASN][1000 genomes]
rs72628115	0.96[ASN][1000 genomes]
rs72628116	0.96[ASN][1000 genomes]
rs72628119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72628120	1.00[EUR][1000 genomes]
rs72628121	1.00[EUR][1000 genomes]
rs72628122	1.00[EUR][1000 genomes]
rs72628124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72628126	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72628127	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72628129	0.83[ASN][1000 genomes]
rs72628130	0.83[ASN][1000 genomes]
rs72628132	0.83[ASN][1000 genomes]
rs954747	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9817923	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24053600-24065000	Weak transcription	Psoas Muscle	Psoas
2	chr3:24058600-24064800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:24061000-24069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links