Variant report

Variant	rs17013996
Chromosome Location	chr3:24037605-24037606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24033094..24034761-chr3:24035791..24038107,2	K562	blood:
2	chr3:23986774..23988975-chr3:24037159..24039281,2	K562	blood:
3	chr3:24030711..24032570-chr3:24036287..24038939,2	K562	blood:

Variant related genes	Relation type
ENSG00000174738	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17013983	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17013984	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17014013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858099	0.94[ASN][1000 genomes]
rs59090179	1.00[EUR][1000 genomes]
rs6550830	0.85[ASN][1000 genomes]
rs72628117	0.96[ASN][1000 genomes]
rs72628119	1.00[EUR][1000 genomes]
rs72628120	1.00[EUR][1000 genomes]
rs72628121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72628122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72628123	1.00[EUR][1000 genomes]
rs72628124	1.00[EUR][1000 genomes]
rs72628126	1.00[EUR][1000 genomes]
rs72628127	1.00[EUR][1000 genomes]
rs954747	1.00[EUR][1000 genomes]
rs9824855	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24019600-24040800	Weak transcription	NHLF	lung
2	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:24033600-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:24033600-24040600	Weak transcription	Primary B cells from cord blood	blood
5	chr3:24033800-24040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:24034200-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:24034600-24040400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:24035200-24040600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:24035800-24040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:24035800-24040600	Weak transcription	Brain Angular Gyrus	brain
11	chr3:24036000-24038200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:24036000-24040400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:24036000-24040400	Weak transcription	HSMMtube	muscle
14	chr3:24036000-24040400	Weak transcription	NHDF-Ad	bronchial
15	chr3:24036000-24040600	Weak transcription	Brain Germinal Matrix	brain
16	chr3:24036000-24040600	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:24036000-24040600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:24036000-24040600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:24036000-24040800	Weak transcription	Ovary	ovary
20	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
21	chr3:24036200-24040400	Weak transcription	Adipose Nuclei	Adipose
22	chr3:24036200-24040600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:24036200-24040600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:24036200-24040600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:24036200-24040600	Weak transcription	Fetal Kidney	kidney
26	chr3:24036200-24040600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:24036200-24040600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:24036200-24040800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:24036400-24040400	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:24036400-24040800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:24036400-24043600	Weak transcription	Aorta	Aorta
32	chr3:24036600-24038000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:24037200-24038200	Weak transcription	Fetal Stomach	stomach
34	chr3:24037200-24038800	Enhancers	Fetal Lung	lung
35	chr3:24037400-24037800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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