Variant report

Variant	rs17013984
Chromosome Location	chr3:24032968-24032969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17013983	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17013996	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17014013	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4858099	0.92[ASN][1000 genomes]
rs6550830	0.83[ASN][1000 genomes]
rs72628117	0.98[ASN][1000 genomes]
rs72628121	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72628122	1.00[AMR][1000 genomes]
rs9824855	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:24018200-24033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:24019400-24033200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:24019400-24035400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:24019600-24040800	Weak transcription	NHLF	lung
6	chr3:24021600-24033200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:24021800-24033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:24021800-24033400	Weak transcription	NHDF-Ad	bronchial
9	chr3:24023200-24035000	Weak transcription	Right Atrium	heart
10	chr3:24023200-24035200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:24023400-24033200	Weak transcription	Adipose Nuclei	Adipose
12	chr3:24023600-24033400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:24024000-24033200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:24024000-24035200	Weak transcription	Left Ventricle	heart
15	chr3:24025400-24033000	Weak transcription	Primary B cells from cord blood	blood
16	chr3:24029000-24035000	Weak transcription	Lung	lung
17	chr3:24029800-24033200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:24031800-24033000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:24032000-24033200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:24032000-24033200	Enhancers	Fetal Brain Male	brain
22	chr3:24032000-24033400	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:24032000-24033400	Enhancers	Brain Cingulate Gyrus	brain
24	chr3:24032000-24033800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:24032000-24034800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr3:24032200-24033000	Enhancers	Brain Angular Gyrus	brain
27	chr3:24032200-24033200	Enhancers	Brain Germinal Matrix	brain
28	chr3:24032200-24033600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:24032200-24034200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:24032200-24034200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:24032200-24034200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:24032200-24034200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:24032200-24034600	Enhancers	Stomach Smooth Muscle	stomach
34	chr3:24032200-24035800	Enhancers	Fetal Brain Female	brain
35	chr3:24032200-24036000	Enhancers	Brain Substantia Nigra	brain
36	chr3:24032200-24036200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:24032200-24036600	Enhancers	Fetal Stomach	stomach
38	chr3:24032400-24034600	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr3:24032600-24033600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:24032600-24034000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:24032600-24034600	Enhancers	HUVEC	blood vessel
42	chr3:24032600-24036000	Enhancers	Fetal Lung	lung
43	chr3:24032600-24036200	Enhancers	Rectal Smooth Muscle	rectum
44	chr3:24032800-24033000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr3:24032800-24033000	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr3:24032800-24033000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr3:24032800-24033000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr3:24032800-24033200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:24032800-24033400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr3:24032800-24033400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links