Variant report

Variant	rs9824855
Chromosome Location	chr3:24040844-24040845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:24040514..24042226-chr3:24050614..24053145,2	K562	blood:
2	chr3:23961544..23965594-chr3:24039129..24042717,4	K562	blood:
3	chr3:24039886..24041425-chr3:24279180..24280348,12	MCF-7	breast:
4	chr3:24040167..24041064-chr3:24724982..24725943,2	K562	blood:
5	chr3:24040225..24041035-chr3:24725028..24725621,3	MCF-7	breast:
6	chr3:24040049..24041089-chr3:24227019..24228043,3	MCF-7	breast:
7	chr3:24040191..24041133-chr3:24279212..24279927,3	MCF-7	breast:
8	chr3:24040156..24041043-chr3:24129982..24130913,4	MCF-7	breast:
9	chr3:24040099..24041130-chr3:24190239..24191261,6	MCF-7	breast:
10	chr3:24040515..24041086-chr3:24190190..24190868,4	K562	blood:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10212572	1.00[CEU][hapmap]
rs17013983	0.94[ASN][1000 genomes]
rs17013984	0.94[ASN][1000 genomes]
rs17013996	0.90[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs17014013	0.96[ASN][1000 genomes]
rs4858099	0.94[ASN][1000 genomes]
rs6550830	0.85[ASN][1000 genomes]
rs72628117	0.92[ASN][1000 genomes]
rs72628121	0.89[ASN][1000 genomes]
rs72628122	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
2	chr3:24036400-24043600	Weak transcription	Aorta	Aorta
3	chr3:24040400-24041000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:24040400-24041000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:24040400-24041000	Enhancers	Fetal Stomach	stomach
6	chr3:24040400-24041200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:24040400-24041200	Enhancers	Adipose Nuclei	Adipose
8	chr3:24040400-24041200	Enhancers	Colon Smooth Muscle	Colon
9	chr3:24040600-24041000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:24040600-24041000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:24040600-24041000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:24040600-24041000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:24040600-24041000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:24040600-24041000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:24040600-24041000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:24040600-24041000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:24040600-24041000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:24040600-24041000	Enhancers	Liver	Liver
19	chr3:24040600-24041000	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr3:24040600-24041000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr3:24040600-24041000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:24040600-24041000	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr3:24040600-24041000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:24040600-24041000	Enhancers	Fetal Kidney	kidney
25	chr3:24040600-24041000	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:24040600-24041000	Enhancers	A549	lung
27	chr3:24040600-24041000	Flanking Active TSS	NHDF-Ad	bronchial
28	chr3:24040600-24041200	Enhancers	Primary B cells from cord blood	blood
29	chr3:24040600-24041200	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:24040600-24041600	Enhancers	Brain Angular Gyrus	brain
31	chr3:24040600-24041600	Enhancers	Brain Hippocampus Middle	brain
32	chr3:24040800-24041000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:24040800-24041000	Active TSS	Brain Anterior Caudate	brain
34	chr3:24040800-24041000	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr3:24040800-24041000	Flanking Active TSS	Fetal Brain Male	brain
36	chr3:24040800-24041000	Bivalent Enhancer	HUVEC	blood vessel
37	chr3:24040800-24041200	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr3:24040800-24041200	Enhancers	Primary hematopoietic stem cells	blood
39	chr3:24040800-24041200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr3:24040800-24041200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:24040800-24041200	Enhancers	Ovary	ovary
42	chr3:24040800-24041200	Enhancers	NHLF	lung
43	chr3:24040800-24041800	Enhancers	Fetal Lung	lung

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