Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24141927..24144068-chr3:24144999..24146572,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10865794	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10865795	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11129133	0.96[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11916435	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11927256	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11928242	0.96[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1464010	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2360959	0.89[YRI][hapmap]
rs4241523	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6550839	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6550844	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6764378	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6766462	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6769403	0.80[CHD][hapmap]
rs6807599	0.82[CHD][hapmap]
rs7619618	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7628378	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7630879	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs826374	0.80[CHD][hapmap]
rs844107	0.87[MEX][hapmap]
rs938080	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9879256	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9879275	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24144000-24145200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:24144400-24147400	Weak transcription	NHDF-Ad	bronchial

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