Variant report

Variant	rs7619618
Chromosome Location	chr3:24089584-24089585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10865794	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10865795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11129133	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11916435	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11927256	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11928242	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464010	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1511536	0.80[AFR][1000 genomes]
rs4241523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6550839	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550848	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6764378	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6766462	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6781758	0.82[AFR][1000 genomes]
rs7622588	0.80[AMR][1000 genomes]
rs7628378	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7630879	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs844107	0.84[CHB][hapmap]
rs938080	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9879256	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9879275	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24088200-24091400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
4	chr3:24088600-24089600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:24088600-24090600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:24088600-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:24088600-24090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:24088800-24089800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:24088800-24089800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:24088800-24090000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:24088800-24090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:24088800-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:24088800-24090600	Enhancers	Colon Smooth Muscle	Colon
14	chr3:24088800-24090600	Enhancers	Hela-S3	cervix
15	chr3:24088800-24090600	Enhancers	NHEK	skin
16	chr3:24088800-24090600	Enhancers	Osteobl	bone
17	chr3:24088800-24090800	Enhancers	Adipose Nuclei	Adipose
18	chr3:24088800-24090800	Enhancers	Placenta	Placenta
19	chr3:24088800-24090800	Enhancers	Ovary	ovary
20	chr3:24088800-24090800	Enhancers	HMEC	breast
21	chr3:24088800-24090800	Enhancers	NHLF	lung
22	chr3:24088800-24091400	Enhancers	HSMMtube	muscle
23	chr3:24089000-24089600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:24089000-24089800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:24089000-24089800	Enhancers	Psoas Muscle	Psoas
26	chr3:24089000-24089800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr3:24089000-24089800	Enhancers	A549	lung
28	chr3:24089000-24089800	Enhancers	HSMM	muscle
29	chr3:24089000-24090000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr3:24089000-24090600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:24089000-24090600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:24089000-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:24089000-24090600	Enhancers	Aorta	Aorta
34	chr3:24089200-24089800	Enhancers	HUVEC	blood vessel
35	chr3:24089200-24089800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr3:24089200-24090400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr3:24089200-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:24089200-24090600	Enhancers	Rectal Smooth Muscle	rectum
39	chr3:24089400-24090600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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