Variant report

Variant	rs6781758
Chromosome Location	chr3:24119857-24119858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10865794	0.82[AFR][1000 genomes]
rs10865795	0.82[AFR][1000 genomes]
rs11129133	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11925334	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1464010	0.85[AFR][1000 genomes]
rs1511536	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1511537	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1511540	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2063480	0.81[CEU][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes]
rs2360958	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2360959	0.91[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4241523	0.81[AFR][1000 genomes]
rs4416337	0.94[EUR][1000 genomes]
rs4561770	0.81[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4568061	0.86[JPT][hapmap]
rs4624512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60226192	0.95[EUR][1000 genomes]
rs6550840	0.85[EUR][1000 genomes]
rs6550842	0.94[EUR][1000 genomes]
rs6550846	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6764378	0.85[AFR][1000 genomes]
rs6765461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6766462	0.89[AFR][1000 genomes]
rs6777075	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7612158	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7619618	0.82[AFR][1000 genomes]
rs7623641	0.93[JPT][hapmap];0.88[EUR][1000 genomes]
rs7628378	0.82[AFR][1000 genomes]
rs7630879	0.85[AFR][1000 genomes]
rs7634184	1.00[CEU][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes]
rs7639580	0.94[EUR][1000 genomes]
rs7646501	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24119600-24128200	Weak transcription	Aorta	Aorta

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