Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11925334	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1511536	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1511537	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1511540	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2063480	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2360958	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2360959	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4416337	0.92[EUR][1000 genomes]
rs4561770	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4624512	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60226192	0.94[EUR][1000 genomes]
rs6550840	0.83[EUR][1000 genomes]
rs6550842	0.92[EUR][1000 genomes]
rs6765461	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6777075	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6781758	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7612158	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7623641	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7634184	0.92[EUR][1000 genomes]
rs7639580	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv965149	chr3:24138426-24140099	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6550846	NR1D2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24137200-24142200	Weak transcription	A549	lung
2	chr3:24137800-24142800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:24138400-24139800	Enhancers	Aorta	Aorta
4	chr3:24138600-24142200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:24139000-24141600	Weak transcription	Fetal Stomach	stomach
6	chr3:24139000-24141800	Weak transcription	Fetal Lung	lung
7	chr3:24139000-24142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:24139000-24142000	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:24139000-24142000	Weak transcription	NHDF-Ad	bronchial
10	chr3:24139000-24142200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:24139000-24142200	Weak transcription	HSMM	muscle
12	chr3:24139000-24142800	Weak transcription	HSMMtube	muscle
13	chr3:24139400-24142600	Weak transcription	Right Atrium	heart

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