Variant report

Variant	rs11925334
Chromosome Location	chr3:24153725-24153726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24153412..24157403-chr3:24157612..24160502,5	K562	blood:
2	chr3:24152256..24154912-chr3:24158314..24160502,3	K562	blood:
3	chr3:24148783..24152054-chr3:24153553..24155525,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1511536	0.92[EUR][1000 genomes]
rs1511537	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1511540	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2063480	0.85[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2360958	1.00[CEU][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2360959	0.93[CEU][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4416337	0.93[EUR][1000 genomes]
rs4561770	0.85[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4568061	0.82[JPT][hapmap]
rs4624512	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs60226192	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6550840	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6550842	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6550846	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6765461	1.00[CEU][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs6777075	0.92[EUR][1000 genomes]
rs6781758	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7612158	0.94[EUR][1000 genomes]
rs7623641	0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7634184	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7639580	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24148400-24163000	Weak transcription	Aorta	Aorta
3	chr3:24149000-24164000	Weak transcription	Left Ventricle	heart
4	chr3:24151200-24154000	Enhancers	NHDF-Ad	bronchial
5	chr3:24151200-24154200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:24153200-24153800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:24153200-24154000	Enhancers	Adipose Nuclei	Adipose
8	chr3:24153400-24154000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:24153600-24153800	Enhancers	Psoas Muscle	Psoas

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