Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24146957..24149628-chr3:24155407..24157243,2	MCF-7	breast:
2	chr3:24142494..24143999-chr3:24147403..24150339,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11925334	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1511536	0.85[EUR][1000 genomes]
rs1511537	0.86[EUR][1000 genomes]
rs1511540	0.92[EUR][1000 genomes]
rs2063480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2063481	0.88[CHB][hapmap]
rs2089848	0.88[CHB][hapmap]
rs2360958	0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2360959	0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34312629	0.80[ASN][1000 genomes]
rs4416337	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4561770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4568061	0.86[JPT][hapmap]
rs4624512	0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs60226192	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6550840	0.87[ASN][1000 genomes]
rs6550842	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6550846	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6765461	0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs6777075	0.85[EUR][1000 genomes]
rs6781758	0.88[EUR][1000 genomes]
rs7612158	0.87[EUR][1000 genomes]
rs7634184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639580	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7623641	NR1D2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24147400-24148200	Enhancers	NHDF-Ad	bronchial

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