Variant report
| Variant | rs6551341 |
|---|---|
| Chromosome Location | chr3:88598891-88598892 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C3orf38-2 | chr3:88596928-88599994 | l_2409_chr3:88470262-88514628_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11915416 | 0.82[ASN][1000 genomes] |
| rs28654850 | 0.83[ASN][1000 genomes] |
| rs6551353 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6776805 | 0.81[ASN][1000 genomes] |
| rs7431389 | 0.83[ASN][1000 genomes] |
| rs7629888 | 0.80[ASN][1000 genomes] |
| rs7646670 | 0.80[ASN][1000 genomes] |
| rs9821806 | 0.83[ASN][1000 genomes] |
| rs9861644 | 0.90[ASN][1000 genomes] |
| rs9861684 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
